Browse Element(s) Details


OsAffx.30917.1.S1_at

Description tigr:9639.m01004
TID=OsAffx.30917.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1062011/11NBS-LRR disease resistance protein, putative
LOC_Os02g535001/11Activator 1 36 kDa subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g10580NANA11+5799043..5801418transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g10590Os.9836.1.S1_at4/1111+5804219..5804485hypothetical protein
LOC_Os11g10600OsAffx.18785.1.S1_at10/1111+5808753..5811520hypothetical protein
LOC_Os11g10600OsAffx.25936.5.S1_x_at1/1111+5808753..5811520hypothetical protein
LOC_Os11g10610OsAffx.7065.1.S1_s_at11/1111+5816301..5822197Leucine Rich Repeat family protein, expressed
LOC_Os11g10620OsAffx.30917.1.S1_at11/1111+5823814..5824134NBS-LRR disease resistance protein, putative
LOC_Os11g10630NANA11+5827259..5829679retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g10640OsAffx.18786.1.S1_at11/1111+5830697..5836246Protein kinase domain containing protein, expressed
LOC_Os11g10650OsAffx.7066.1.S1_at11/1111+5837436..5838266hypothetical protein
LOC_Os11g10670OsAffx.18788.1.S1_at11/1111+5847521..5849867hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005663cellular_componentDNA replication factor C complex
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30917.1.S1_at--312--6051Chr11:5824032..5824056 (25 bp)
GAGATCAAGCGGCTGTGCAACCTCA
LOC_Os11g10620
OsAffx.30917.1.S1_at--327--7351Chr11:5824018..5824042 (25 bp)
GTGCAACCTCAACGATGACCTAGAA
LOC_Os11g10620
OsAffx.30917.1.S1_at--254--1411Chr11:5823994..5824018 (25 bp)
AGACATGAGGATGACGCTGGAATCT
LOC_Os11g10620
OsAffx.30917.1.S1_at--846--4711Chr11:5823979..5824003 (25 bp)
GCTGGAATCTGTCTTGGCGTTGCTC
LOC_Os11g10620
OsAffx.30917.1.S1_at--1147--471Chr11:5823973..5823997 (25 bp)
ATCTGTCTTGGCGTTGCTCAAGGAC
LOC_Os11g10620
OsAffx.30917.1.S1_at--152--1831Chr11:5823950..5823974 (25 bp)
ACGCCGAGAGGCAGTCAGTTAAGAG
LOC_Os11g10620
OsAffx.30917.1.S1_at--653--5411Chr11:5823904..5823928 (25 bp)
GAAGCGGCTCAAGTTCGCTGCATAT
LOC_Os11g10620
OsAffx.30917.1.S1_at--282--2831Chr11:5823894..5823918 (25 bp)
AAGTTCGCTGCATATGACATCTCCG
LOC_Os11g10620
OsAffx.30917.1.S1_at--344--4951Chr11:5823885..5823909 (25 bp)
GCATATGACATCTCCGACATGATTG
LOC_Os11g10620
OsAffx.30917.1.S1_at--189--1232Chr11:5823857..5823881 (25 bp)
AGTTCGAAGCAGATGCCATGACCAA
LOC_Os11g10620
OsAffx.30917.1.S1_at--950--9191Chr11:5823844..5823868 (25 bp)
TGCCATGACCAAAGCAGTTGCACCA
LOC_Os11g10620
Target Sequence 
GAGATCAAGCGGCTGTGCAACCTCAACGATGACCTAGAAGACATGAGGATGACGCTGGAATCTGTCTTGGCGTTGCTCAA
GGACGCCGAGAGGCAGTCAGTTAAGAGCGTGGCGGTGTTGCTGTGGCTGAAGCGGCTCAAGTTCGCTGCATATGACATCT
CCGACATGATTGATGAGTTCGAAGCAGATGCCATGACCAAAGCAGTTGCACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30917.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis