Browse Element(s) Details


OsAffx.30921.1.S1_x_at

Description tigr:9630.m04131
TID=OsAffx.30921.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4307011/11hypothetical protein
LOC_Os11g107402/11pentatricopeptide, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g43040Os.5427.1.S1_at11/112+25907063..25911006expressed protein
LOC_Os02g43050Os.25560.1.S1_at11/112+25916471..25921581kinesin heavy chain, putative, expressed
LOC_Os02g43060NANA2+25925642..25928035retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g43070OsAffx.30921.1.S1_s_at11/112+25931303..25932544hypothetical protein
LOC_Os02g43070OsAffx.30921.1.S1_x_at11/112+25931303..25932544hypothetical protein
LOC_Os02g43070OsAffx.30921.2.S1_at3/112+25931303..25932544hypothetical protein
LOC_Os02g43070OsAffx.24253.1.S1_x_at1/112+25931303..25932544hypothetical protein
LOC_Os02g43080NANA2+25934472..25938241salt-inducible protein, putative
LOC_Os02g43090Os.10557.1.S1_at11/112+25940594..25949456Myristoyl-acyl carrier protein thioesterase, chloroplast precursor, putative, expressed
LOC_Os02g43100OsAffx.12468.1.S1_at10/112+25949533..25950487hypothetical protein
LOC_Os02g43110Os.38169.1.S1_a_at11/112+25951291..25953508Sodium/calcium exchanger 1 precursor, putative, expressed
LOC_Os02g43110Os.38169.2.S1_at11/112+25951291..25953508Sodium/calcium exchanger 1 precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0005739cellular_componentmitochondrion
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30921.1.S1_x_at--789--3931Chr02:25931524..25931548 (25 bp)
CGGCGAGAGCTCGATTTATGGCGGC
LOC_Os02g43070
OsAffx.30921.1.S1_x_at--42--6011Chr02:25931528..25931552 (25 bp)
GAGAGCTCGATTTATGGCGGCGGGA
LOC_Os02g43070
OsAffx.30921.1.S1_x_at--945--8131Chr02:25931600..25931624 (25 bp)
GGACATGCTAGAACGAGGCAGCGAC
LOC_Os02g43070
OsAffx.30921.1.S1_x_at--356--2111Chr02:25931602..25931626 (25 bp)
ACATGCTAGAACGAGGCAGCGACGA
LOC_Os02g43070
OsAffx.30921.1.S1_x_at--624--611Chr02:25931604..25931628 (25 bp)
ATGCTAGAACGAGGCAGCGACGAGA
LOC_Os02g43070
OsAffx.30921.1.S1_x_at--565--1471Chr02:25931646..25931670 (25 bp)
AGCAAGGCGTGCGATGGGCTACGTC
LOC_Os02g43070
OsAffx.30921.1.S1_x_at--219--4011Chr02:25931653..25931677 (25 bp)
CGTGCGATGGGCTACGTCGAGCGGC
LOC_Os02g43070
OsAffx.30921.1.S1_x_at--616--4691Chr02:25931726..25931750 (25 bp)
GCGGCACAGCGTTCGGCAAGACGAA
LOC_Os02g43070
OsAffx.30921.1.S1_x_at--235--9311Chr02:25931909..25931933 (25 bp)
TCCCCGGTGCTTGGCGACGAATGGC
LOC_Os02g43070
OsAffx.30921.1.S1_x_at--693--5472Chr11:5892143..5892167 (25 bp)
GAACTCGGCATGGTGAAGACGCCTG
LOC_Os11g10740
OsAffx.30921.1.S1_x_at--589--7612Chr11:5892190..5892214 (25 bp)
GGGAAGAGCTCATGCTTTCTACCAG
LOC_Os11g10740
Target Sequence 
CGGCGAGAGCTCGATTTATGGCGGCGGGAGCATCTCCGGTGTTCGAGGGGTGCGTTCCCGGCGTCGGATTGGACGGGGAC
ATGCTAGAACGAGGCAGCGACGAGAGGCGGCCTCCGGGACAGAGCAAGGCGTGCGATGGGCTACGTCGAGCGGCGGCGGG
CGCGGCGCGGCGTGCGGCGGGCTATGGCGTGCGGCAGTGGGCGCGGCACAGCGTTCGGCAAGACGAAGAACACGGTGGGG
GCTCACCGACGAGAGGGGAGCGGCGTTGGTGATGCGGAGGGAGTCGCGGCGAGGCGGCGCGGCACCGAGAGGGCGCGGCC
GGGGAAGAAGAGAGGGAGAGGTGGCGCCCGGAGCTCCTCGTCACGCGCCCACGCACGCACCGGCCTCCCCGGTGCTTGGC
GACGAATGGCGACGGCGCGAGCAGGGCAGGGGCAATAAGGCGGCGACGGTGGTTCGGCGGCAATGGCGCGGGTTGAGATC
AAGGATGAGAGAACTCGGCATGGTGAAGACGCCTGGGTGCAGTCGGATCGATGTGAAGGGAAGAGCTCATGCTTTCTACC
AG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30921.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis