Browse Element(s) Details


OsAffx.30960.1.S1_at

Description tigr:9639.m01275
TID=OsAffx.30960.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1383011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g13810Os.10371.1.S1_at11/1111+7590762..7602318expressed protein
LOC_Os11g13820OsAffx.18834.1.S1_x_at10/1111+7609924..7613829Protein phosphatase 2C containing protein
LOC_Os11g13820OsAffx.18834.1.S1_at10/1111+7609924..7613829Protein phosphatase 2C containing protein
LOC_Os11g13830OsAffx.30960.1.S1_at11/1111+7615460..7615705hypothetical protein
LOC_Os11g13840NANA11+7623129..7623734AP2 domain containing protein, expressed
LOC_Os11g13850Os.16966.1.S1_at11/1111+7634946..7638419Rieske domain containing protein, expressed
LOC_Os11g13850OsAffx.30963.1.S1_at11/1111+7634946..7638419Rieske domain containing protein, expressed
LOC_Os11g13850Os.16966.1.S1_s_at11/1111+7634946..7638419Rieske domain containing protein, expressed
LOC_Os11g13860Os.52720.1.S1_at11/1111+7639581..7645141Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30960.1.S1_at--692--8351Chr11:7615607..7615631 (25 bp)
GGCGTCGATGGTGTCGGATTCCGGG
LOC_Os11g13830
OsAffx.30960.1.S1_at--592--8272Chr11:7615633..7615657 (25 bp)
GGCAGGACTCCCCAGCAGTGAGCAC
LOC_Os11g13830
OsAffx.30960.1.S1_at--604--4992Chr11:7615634..7615658 (25 bp)
GCAGGACTCCCCAGCAGTGAGCACT
LOC_Os11g13830
OsAffx.30960.1.S1_at--829--951Chr11:7615636..7615660 (25 bp)
AGGACTCCCCAGCAGTGAGCACTAC
LOC_Os11g13830
OsAffx.30960.1.S1_at--57--8131Chr11:7615637..7615661 (25 bp)
GGACTCCCCAGCAGTGAGCACTACG
LOC_Os11g13830
OsAffx.30960.1.S1_at--774--4351Chr11:7615644..7615668 (25 bp)
CCAGCAGTGAGCACTACGCCAGAGA
LOC_Os11g13830
OsAffx.30960.1.S1_at--183--3411Chr11:7615645..7615669 (25 bp)
CAGCAGTGAGCACTACGCCAGAGAA
LOC_Os11g13830
OsAffx.30960.1.S1_at--460--1531Chr11:7615646..7615670 (25 bp)
AGCAGTGAGCACTACGCCAGAGAAG
LOC_Os11g13830
OsAffx.30960.1.S1_at--1154--5011Chr11:7615647..7615671 (25 bp)
GCAGTGAGCACTACGCCAGAGAAGA
LOC_Os11g13830
OsAffx.30960.1.S1_at--86--3471Chr11:7615648..7615672 (25 bp)
CAGTGAGCACTACGCCAGAGAAGAG
LOC_Os11g13830
OsAffx.30960.1.S1_at--677--8912Chr11:7615651..7615675 (25 bp)
TGAGCACTACGCCAGAGAAGAGCGC
LOC_Os11g13830
Target Sequence 
GGCGTCGATGGTGTCGGATTCCGGGGGGCAGGACTCCCCAGCAGTGAGCACTACGCCAGAGAAGAGCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30960.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis