Browse Element(s) Details


OsAffx.30971.1.S1_at

Description tigr:9639.m01312
TID=OsAffx.30971.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AP005371 periplasmic serine proteinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1417010/11Trypsin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g14150NANA11+7892972..7894681transposon protein, putative, Pong sub-class
LOC_Os11g14160OsAffx.8676.1.S1_at1/1111+7895301..7897324transposon protein, putative, Pong sub-class, expressed
LOC_Os11g14170OsAffx.30971.1.S1_at10/1111+7904674..7912049Trypsin family protein, expressed
LOC_Os11g14180Os.8096.1.S1_at11/1111+7927086..7931151expressed protein
LOC_Os11g14190Os.26629.1.S1_a_at11/1111+7933880..7935117expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004295molecular_functiontrypsin activity
GO:0008236molecular_functionserine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30971.1.S1_at--919--6431Chr11:7907405..7907429 (25 bp)
GATCATCATCTAAACTTCGACCAGG
LOC_Os11g14170
OsAffx.30971.1.S1_at--82--2931NONE
AAGGAAACTCTGGTGGTCCACTTGT
NONE
OsAffx.30971.1.S1_at--14--7791Chr11:7909486..7909510 (25 bp)
GGTCCACTTGTGAATCTTGACGGTG
LOC_Os11g14170
OsAffx.30971.1.S1_at--196--6851Chr11:7909553..7909577 (25 bp)
GTTTGAGCTTTGCAGTACCGATTGA
LOC_Os11g14170
OsAffx.30971.1.S1_at--206--6991Chr11:7909567..7909591 (25 bp)
GTACCGATTGACTCTATTGTGAAAA
LOC_Os11g14170
OsAffx.30971.1.S1_at--13--2811Chr11:7911368..7911392 (25 bp)
AAGATGCTTGACCTTAACCCAATGA
LOC_Os11g14170
OsAffx.30971.1.S1_at--1022--6451Chr11:7911414..7911438 (25 bp)
GATCAAGTTCTTTTCCAGATGTAAA
LOC_Os11g14170
OsAffx.30971.1.S1_at--131--8631Chr11:7911442..7911462 (21 bp)
TGGTGTGCTTGTTCCAATGGTTACA
LOC_Os11g14170
OsAffx.30971.1.S1_at--16--7971Chr11:7911722..7911746 (25 bp)
GGATCACCAGCTGAACATGCAGGAT
LOC_Os11g14170
OsAffx.30971.1.S1_at--604--8031Chr11:7911960..7911984 (25 bp)
GGAGTGCCATTTAAAGTTCTTGTTA
LOC_Os11g14170
OsAffx.30971.1.S1_at--192--7551Chr11:7911988..7912012 (25 bp)
GGGCGAACAATGTAACTGTGTCTTT
LOC_Os11g14170
Target Sequence 
GATCATCATCTAAACTTCGACCAGGTTTGGAAAGAATTAGAACTTCTACGTTGATTACTTTGAAGTTATTATTTGATGAA
TTAGATTTTCTCTTTAAATTTGGAATCCTGAAGGATGAAAAAGGAAACTCTGGTGGTCCACTTGTGAATCTTGACGGTGA
AATTGTCGGAGTTAATGTGATGAAAGTTTGGGCAGCTGATGGTTTGAGCTTTGCAGTACCGATTGACTCTATTGTGAAAA
TAGTGGAGAACTTCAAGAAAAATGGGAGAGTTGTAAGACCATGGCTTGGTTTAAAGATGCTTGACCTTAACCCAATGATC
ATTGCACAACTTAAAGAAAGATCAAGTTCTTTTCCAGATGTAAAAAATGGTGTGCTTGTTCCAATGGTTACACCAGGATC
ACCAGCTGAACATGCAGGATTTCGTCCTGGGGATGTGGTCGTTGAATTTGATGGTAAACTGGTTGAGAGCATCAAAGAGA
TCATTGATATCATGGGGGACAAGGTTGGAGTGCCATTTAAAGTTCTTGTTAAAAGGGCGAACAATGTAACTGTGTCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30971.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis