Browse Element(s) Details


OsAffx.31003.1.S1_at

Description tigr:9639.m01510
TID=OsAffx.31003.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1685010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g16800OsAffx.13740.1.S1_at1/1111+9306074..9307283hypothetical protein
LOC_Os11g16810OsAffx.940.1.S1_x_at1/1111+9312300..9313194transposon protein, putative, unclassified
LOC_Os11g16810OsAffx.22896.1.S1_x_at1/1111+9312300..9313194transposon protein, putative, unclassified
LOC_Os11g16820NANA11+9315006..9321041retrotransposon protein, putative, unclassified
LOC_Os11g16830NANA11+9321837..9324944retrotransposon protein, putative, unclassified
LOC_Os11g16840Os.46314.2.S1_x_at4/1111+9327030..9329947retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g16840Os.10731.2.A1_at2/1111+9327030..9329947retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g16840Os.47114.1.S1_x_at1/1111+9327030..9329947retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g16850OsAffx.31003.1.S1_x_at10/1111+9330937..9332746hypothetical protein
LOC_Os11g16850OsAffx.31003.1.S1_at10/1111+9330937..9332746hypothetical protein
LOC_Os11g16870Os.27691.2.S1_x_at1/1111+9336407..9342380retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g16870Os.27691.1.S1_x_at1/1111+9336407..9342380retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g16890Os.45976.1.S1_x_at2/1111+9347096..9349083transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g16900NANA11+9350551..9353360transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31003.1.S1_at--631--5911Chr11:9330967..9330991 (25 bp)
GAGCTCAATCTGGAATTCACCACCG
LOC_Os11g16850
OsAffx.31003.1.S1_at--982--1571Chr11:9330968..9330992 (25 bp)
AGCTCAATCTGGAATTCACCACCGC
LOC_Os11g16850
OsAffx.31003.1.S1_at--94--4351NONE
CCAGATCCCGCGATTTGGAGGTGGC
NONE
OsAffx.31003.1.S1_at--935--7551Chr11:9332369..9332393 (25 bp)
GGGCCATCCAGATCTAGGTGGTCTC
LOC_Os11g16850
OsAffx.31003.1.S1_at--702--3531Chr11:9332373..9332397 (25 bp)
CATCCAGATCTAGGTGGTCTCCGAC
LOC_Os11g16850
OsAffx.31003.1.S1_at--270--9231Chr11:9332375..9332399 (25 bp)
TCCAGATCTAGGTGGTCTCCGACCA
LOC_Os11g16850
OsAffx.31003.1.S1_at--668--1051Chr11:9332384..9332408 (25 bp)
AGGTGGTCTCCGACCACCTTGAGAC
LOC_Os11g16850
OsAffx.31003.1.S1_at--806--3431Chr11:9332409..9332433 (25 bp)
CAGATCTGGCACCAAGGATCTCGGG
LOC_Os11g16850
OsAffx.31003.1.S1_at--124--6411Chr11:9332541..9332565 (25 bp)
GATCTGGCGGCAAGGAGCACGTGGT
LOC_Os11g16850
OsAffx.31003.1.S1_at--1104--5351Chr11:9332569..9332593 (25 bp)
GAAGAGATGGCAACTGGTGACCTTG
LOC_Os11g16850
OsAffx.31003.1.S1_at--702--6211Chr11:9332676..9332700 (25 bp)
GAGGCCGCGGTAGCCGGCTGTCGGA
LOC_Os11g16850
Target Sequence 
GAGCTCAATCTGGAATTCACCACCGCCAGATCCCGCGATTTGGAGGTGGCGGCTGCCGGTGACCTTGGGGCAGAGGGCGA
AGGAGGAGGTGGCTGCAGCTTGGGGCCATCCAGATCTAGGTGGTCTCCGACCACCTTGAGACCAGATCTGGCACCAAGGA
TCTCGGGGCGGCAGAGAGGCGGTGGCCGGCGACCTTGGGATAGAGGGAGAAGGAGGCGGCGATTGGAGCATGGGGGGCGT
CCAGATCCTGTGGTCCCCAACCACATGGAGACCGGATCTGGCGGCAAGGAGCACGTGGTGGCGAAGAGATGGCAACTGGT
GACCTTGGGGAGAGCGCAAAGAAGGCGGCGCCCCCGAGATCCTGGAGGCCGGCGGCGAGCGAAGGAGATGGCGACGCGGT
CATGGGAGGGAGGCCGCGGTAGCCGGCTGTCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31003.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis