Browse Element(s) Details


OsAffx.31015.2.S1_s_at

Description tigr:9639.m01567
TID=OsAffx.31015.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1712011/11disease resistance protein RPM1 homolog, putative
LOC_Os11g1733011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g17100NANA11+9473355..9473696transposon protein, putative, unclassified
LOC_Os11g17110OsAffx.31015.1.S1_at4/1111+9482935..9483804Leucine Rich Repeat family protein
LOC_Os11g17120OsAffx.31015.2.S1_s_at11/1111+9486132..9487276disease resistance protein RPM1 homolog, putative
LOC_Os11g17130OsAffx.4941.1.S1_at2/1111+9492678..9497830retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g17130OsAffx.18895.1.S1_at1/1111+9492678..9497830retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g17139OsAffx.29073.1.S1_x_at10/1111+9497938..9498414NA
LOC_Os11g17150Os.38764.1.S1_x_at7/1111+9499709..9503474retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g17150Os.45173.1.S1_x_at1/1111+9499709..9503474retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g17150OsAffx.20877.1.S1_at1/1111+9499709..9503474retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g17160OsAffx.13772.1.S1_at1/1111+9504080..9508286transposon protein, putative, unclassified
LOC_Os11g17160OsAffx.13645.1.S1_at1/1111+9504080..9508286transposon protein, putative, unclassified
LOC_Os11g17160OsAffx.8916.1.S1_x_at1/1111+9504080..9508286transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31015.2.S1_s_at--904--3472Chr11:9641280..9641304 (25 bp)
CAGGTAGATGGTGATGCCCACAGGC
LOC_Os11g17330
OsAffx.31015.2.S1_s_at--1112--7392Chr11:9641290..9641314 (25 bp)
GTGATGCCCACAGGCGTGAAAGCAT
LOC_Os11g17330
OsAffx.31015.2.S1_s_at--335--1192Chr11:9641392..9641416 (25 bp)
AGTTAAAGGCTCGTGTTGACATGGC
LOC_Os11g17330
OsAffx.31015.2.S1_s_at--411--10752Chr11:9641407..9641431 (25 bp)
TTGACATGGCGAGTGAACGTCGCAA
LOC_Os11g17330
OsAffx.31015.2.S1_s_at--613--5432Chr11:9641421..9641445 (25 bp)
GAACGTCGCAAGAGGTACAACTTTG
LOC_Os11g17330
OsAffx.31015.2.S1_s_at--704--5832Chr11:9641450..9641474 (25 bp)
GACCTTGTCAAGTTCAATTGGTGTG
LOC_Os11g17330
OsAffx.31015.2.S1_s_at--851--7732Chr11:9641469..9641493 (25 bp)
GGTGTGGTGCCGATCGATCCTCGAT
LOC_Os11g17330
OsAffx.31015.2.S1_s_at--1145--4932Chr11:9641530..9641554 (25 bp)
GCATTGATACACCAAGAGTAGAGCT
LOC_Os11g17330
OsAffx.31015.2.S1_s_at--1112--6072Chr11:9641545..9641569 (25 bp)
GAGTAGAGCTCATCAGGTTTTTGAC
LOC_Os11g17330
OsAffx.31015.2.S1_s_at--218--9632Chr11:9641703..9641727 (25 bp)
TCAGTTTCTCAAAAACCCGACATAA
LOC_Os11g17330
OsAffx.31015.2.S1_s_at--107--3872Chr11:9641748..9641772 (25 bp)
CTGATCAATATAACAGAGCTCGATT
LOC_Os11g17330
Target Sequence 
CAGGTAGATGGTGATGCCCACAGGCGTGAAAGCATAAAAGGTGACAAGATGGCTCATCAAATAATAAAGTTAAAGGCTCG
TGTTGACATGGCGAGTGAACGTCGCAAGAGGTACAACTTTGATGAGACCTTGTCAAGTTCAATTGGTGTGGTGCCGATCG
ATCCTCGATTACCAGCACTCTATGCAGAAAAAGAAAACCTTGTGGGCATTGATACACCAAGAGTAGAGCTCATCAGGTTT
TTGACTGAAGGGGAGGATAAATTGCTGCAAAAACTGCAGGTGGTATCTATTGTTGGACTTGGTGGACTAGGAAAGACAAC
TCTTGCCCGTCAAGTTTATGAAAAAATTGGTGGGCAGTTTGATTGCCAAGCATTTGTGTCAGTTTCTCAAAAACCCGACA
TAAGGAAAATATTCAAAAATATACTGATCAATATAACAGAGCTCGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31015.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis