Browse Element(s) Details


OsAffx.31019.1.S1_at

Description tigr:9636.m01390
TID=OsAffx.31019.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1755011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g17490Os.53540.2.S1_at1/1111+9730897..9731630hypothetical protein
LOC_Os11g17504Os.10419.1.S1_a_at11/1111+9732859..9737703Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
LOC_Os11g17504OsAffx.18901.1.S1_at11/1111+9732859..9737703Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
LOC_Os11g17520OsAffx.13097.1.S1_s_at11/1111+9739339..9743409hypothetical protein
LOC_Os11g17520Os.46613.1.S2_at2/1111+9739339..9743409hypothetical protein
LOC_Os11g17530Os.57138.1.S1_at11/1111+9745970..9750238pentatricopeptide, putative, expressed
LOC_Os11g17530Os.6596.1.S1_at11/1111+9745970..9750238pentatricopeptide, putative, expressed
LOC_Os11g17540Os.48441.1.S1_at11/1111+9751085..9754806Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
LOC_Os11g17550OsAffx.31019.1.S1_at11/1111+9755436..9756398hypothetical protein
LOC_Os11g17560OsAffx.31020.1.S1_at11/1111+9758124..9758684hypothetical protein
LOC_Os11g17570NANA11+9763048..9763401transposon protein, putative, unclassified
LOC_Os11g17580OsAffx.7134.1.S1_at11/1111+9765907..9766614hypothetical protein
LOC_Os11g17590NANA11+9768096..9768683hypothetical protein
LOC_Os11g17600Os.55735.1.S1_at11/1111+9772833..9785545expressed protein
LOC_Os11g17600Os.53370.1.S1_at10/1111+9772833..9785545expressed protein
LOC_Os11g17600Os.53046.1.S1_at1/1111+9772833..9785545expressed protein
LOC_Os11g17600OsAffx.14636.1.S1_at1/1111+9772833..9785545expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31019.1.S1_at--1017--1853Chr08:8268439..8268869 (25 bp)
AAGGGTAAAATATACCATAGCTCTG
NONE
OsAffx.31019.1.S1_at--287--3033Chr08:8268478..8268502 (25 bp)
AATCCAGCATTTTGAAGGGTCTTTA
NONE
OsAffx.31019.1.S1_at--980--10713Chr08:8268489..8268513 (25 bp)
TTGAAGGGTCTTTATGATGCTCAGG
NONE
OsAffx.31019.1.S1_at--334--3713Chr08:8268643..8268667 (25 bp)
CTAGAGACAGAAGCTTCACACGCCA
NONE
OsAffx.31019.1.S1_at--8--1453Chr08:8268651..8268675 (25 bp)
AGAAGCTTCACACGCCAACCTTGGA
NONE
OsAffx.31019.1.S1_at--863--2153Chr08:8268660..8268720 (25 bp)
ACACGCCAACCTTGGATGCTTGGAA
NONE
OsAffx.31019.1.S1_at--443--4393Chr11:9755510..9755534 (25 bp)
GCCAACCTTGGATGCTTGGAAGTTG
LOC_Os11g17550
OsAffx.31019.1.S1_at--967--10833Chr08:11243959..11243980 (22 bp)
TTGGAAGTTGTGATAGTTTTTCTGC
NONE
OsAffx.31019.1.S1_at--852--6814Chr08:8268694..8268718 (25 bp)
GTTTTTCTGCACCTACATGAACTGG
NONE
OsAffx.31019.1.S1_at--761--10573Chr08:8268698..8268720 (23 bp)
TTCTGCACCTACATGAACTGGAAGA
NONE
OsAffx.31019.1.S1_at--226--2113Chr08:8268708..8268733 (25 bp)
ACATGAACTGGAAGAGCTGCCCCTC
NONE
Target Sequence 
AAGGGTAAAATATACCATAGCTCTGNCCAAGTNCATGAAGAATCCAGCATTTTGAAGGGTCTTTATGATGCTCAGGGATT
CATAGTGCGATCAATCATGAATGCCAACGACGACCAGAAGCTGCANCTAGAGACAGAAGCTTCACACGCCAACCTTGGAT
GCTTGGAAGTTGTGATAGTTTTTCTGCACCTACATGAACTGGAAGAGCTGCCCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31019.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis