Browse Element(s) Details


OsAffx.31032.1.S1_at

Description tigr:9639.m01651
TID=OsAffx.31032.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1794010/11hypothetical protein
LOC_Os11g340801/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g17910OsAffx.7136.1.S1_at11/1111+10029837..10030592expressed protein
LOC_Os11g17920NANA11+10035610..10036173hypothetical protein
LOC_Os11g17930Os.11263.1.A1_at11/1111+10046204..10047642expressed protein
LOC_Os11g17940OsAffx.31032.1.S1_at10/1111+10053756..10054910hypothetical protein
LOC_Os11g17954Os.54358.1.S1_at11/1111+10059734..10064080transposon protein, putative, Pong sub-class, expressed
LOC_Os11g17954OsAffx.9060.1.S1_at1/1111+10059734..10064080transposon protein, putative, Pong sub-class, expressed
LOC_Os11g17954OsAffx.27865.1.S1_x_at1/1111+10059734..10064080transposon protein, putative, Pong sub-class, expressed
LOC_Os11g17970OsAffx.18909.1.S1_at11/1111+10074214..10080701POT family protein, expressed
LOC_Os11g17970OsAffx.18909.1.S1_x_at11/1111+10074214..10080701POT family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31032.1.S1_at--693--5871NONE
GAGCGCTAGGCAGGTGGCTACACCA
NONE
OsAffx.31032.1.S1_at--413--8492Chr11:10054465..10054489 (25 bp)
TGGCTACACCAGTGAGCCGGTTGGT
LOC_Os11g17940
OsAffx.31032.1.S1_at--996--2451Chr11:10054508..10054532 (25 bp)
AACAAGTGGGCGGTCGGTGGCATCG
LOC_Os11g17940
OsAffx.31032.1.S1_at--958--1611Chr11:10054564..10054588 (25 bp)
AGCTGTGCATGCAGAGCGCGAAGAT
LOC_Os11g17940
OsAffx.31032.1.S1_at--483--1631Chr11:10054578..10054602 (25 bp)
AGCGCGAAGATCGATGCGGTTGTAC
LOC_Os11g17940
OsAffx.31032.1.S1_at--213--8752Chr11:10054598..10054622 (25 bp)
TGTACGGATGGAGTGCGAGCGGATG
LOC_Os11g17940
OsAffx.31032.1.S1_at--373--1632Chr11:10054615..10054639 (25 bp)
AGCGGATGTGCGTCGGGCTTGAGCA
LOC_Os11g17940
OsAffx.31032.1.S1_at--256--8911Chr11:10054634..10054658 (25 bp)
TGAGCAGTGTCAAGCGCTGGTTCGC
LOC_Os11g17940
OsAffx.31032.1.S1_at--881--9712Chr11:10054643..10054667 (25 bp)
TCAAGCGCTGGTTCGCTCGGTGTCG
LOC_Os11g17940
OsAffx.31032.1.S1_at--54--1471Chr11:10054693..10054717 (25 bp)
AGAAGGAGGTCGAGCTGGATGCCGC
LOC_Os11g17940
OsAffx.31032.1.S1_at--759--8531Chr11:10054738..10054762 (25 bp)
TGGAGGAGCAGCTCCGTCAGGCCAC
LOC_Os11g17940
Target Sequence 
GAGCGCTAGGCAGGTGGCTACACCAGTGAGCCGGTTGGTGGAGTCGGCGACGACGTCAACAAGTGGGCGGTCGGTGGCAT
CGGCTGCGGCGGTAGGGGATGCGCTGGTGTCGGAGCTGTGCATGCAGAGCGCGAAGATCGATGCGGTTGTACGGATGGAG
TGCGAGCGGATGTGCGTCGGGCTTGAGCAGTGTCAAGCGCTGGTTCGCTCGGTGTCGGTCGCCGCGGCACGGCGGCTGCG
GGAGAAGGAGGTCGAGCTGGATGCCGCCCGACGCCGCGCCGCCGAGCTGGAGGAGCAGCTCCGTCAGGCCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31032.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis