Browse Element(s) Details


OsAffx.31033.1.S1_at

Description tigr:9639.m01655
TID=OsAffx.31033.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1798010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g17954Os.54358.1.S1_at11/1111+10059734..10064080transposon protein, putative, Pong sub-class, expressed
LOC_Os11g17954OsAffx.9060.1.S1_at1/1111+10059734..10064080transposon protein, putative, Pong sub-class, expressed
LOC_Os11g17954OsAffx.27865.1.S1_x_at1/1111+10059734..10064080transposon protein, putative, Pong sub-class, expressed
LOC_Os11g17970OsAffx.18909.1.S1_at11/1111+10074214..10080701POT family protein, expressed
LOC_Os11g17970OsAffx.18909.1.S1_x_at11/1111+10074214..10080701POT family protein, expressed
LOC_Os11g17980OsAffx.31033.1.S1_at10/1111+10081039..10081907hypothetical protein
LOC_Os11g17990Os.46012.3.S1_x_at5/1111+10085974..10091655retrotransposon protein, putative, unclassified
LOC_Os11g17990Os.46012.2.S1_x_at3/1111+10085974..10091655retrotransposon protein, putative, unclassified
LOC_Os11g17990Os.46012.3.S1_at2/1111+10085974..10091655retrotransposon protein, putative, unclassified
LOC_Os11g17990Os.54691.1.S1_x_at1/1111+10085974..10091655retrotransposon protein, putative, unclassified
LOC_Os11g18000OsAffx.31034.1.S1_at10/1111+10094394..10097516hypothetical protein
LOC_Os11g18010OsAffx.18910.1.S1_at11/1111+10106236..10107068hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31033.1.S1_at--767--4431NONE
GCCTTGCCGGCCGATGAAATAGTCG
NONE
OsAffx.31033.1.S1_at--784--10491Chr11:10081346..10081370 (25 bp)
TTAATCCAGCCGAGACGACAAGTCA
LOC_Os11g17980
OsAffx.31033.1.S1_at--255--4111Chr11:10081331..10081355 (25 bp)
CGACAAGTCAAGATCCTCCAACGGG
LOC_Os11g17980
OsAffx.31033.1.S1_at--156--8671Chr11:10081257..10081281 (25 bp)
TGTGGTCCGGCTCGTACACGTCCAT
LOC_Os11g17980
OsAffx.31033.1.S1_at--333--3331Chr11:10081241..10081265 (25 bp)
CACGTCCATCAAGCCATGACAGTGT
LOC_Os11g17980
OsAffx.31033.1.S1_at--765--6091Chr11:10081190..10081214 (25 bp)
GAGTAACTGCTCTTGGGCGCCGATC
LOC_Os11g17980
OsAffx.31033.1.S1_at--290--4991Chr11:10081155..10081179 (25 bp)
GCATGCGCACAGATCGCACTGGAGT
LOC_Os11g17980
OsAffx.31033.1.S1_at--11--5891Chr11:10081124..10081148 (25 bp)
GAGCGCGCTGTTTGATCCATAATTT
LOC_Os11g17980
OsAffx.31033.1.S1_at--469--6351Chr11:10081111..10081135 (25 bp)
GATCCATAATTTATCCGCGCGTCGT
LOC_Os11g17980
OsAffx.31033.1.S1_at--508--7211Chr11:10081091..10081115 (25 bp)
GTCGTCACTCCGAGGCAGGGCTGCA
LOC_Os11g17980
OsAffx.31033.1.S1_at--877--4291Chr11:10081072..10081096 (25 bp)
GCTGCAGACGACTGGGTTGGTAACC
LOC_Os11g17980
Target Sequence 
GCCTTGCCGGCCGATGAAATAGTCGAGGGGAAAGATGAAATAGTTGACGGGAAAGACCGGAAGAATATAATTAATCCAGC
CGAGACGACAAGTCAAGATCCTCCAACGGGGCGTGCCTCGGGAAGAGGATGTAGCCTAGGTGGGCGGCAACGACGCCGGT
GTGGTCCGGCTCGTACACGTCCATCAAGCCATGACAGTGTAGGTAGAAGTGGAGAGGAACGGCGGGGAGTAACTGCTCTT
GGGCGCCGATCTCTGCTAGCCGCATGCGCACAGATCGCACTGGAGTCAAGTGGAGCGCGCTGTTTGATCCATAATTTATC
CGCGCGTCGTCACTCCGAGGCAGGGCTGCAGACGACTGGGTTGGTAACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31033.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis