Browse Element(s) Details


OsAffx.31038.1.S1_at

Description tigr:9639.m01690
TID=OsAffx.31038.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1833010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g18300OsAffx.18916.1.S1_at11/1111+10291297..10291992hypothetical protein
LOC_Os11g18310OsAffx.18917.1.S1_at3/1111+10299729..10300547Cycloartenol synthase, putative
LOC_Os11g18320OsAffx.18918.1.S1_at11/1111+10306734..10308857hypothetical protein
LOC_Os11g18320Os.55138.1.S1_x_at1/1111+10306734..10308857hypothetical protein
LOC_Os11g18330OsAffx.31038.1.S1_at10/1111+10311838..10312380hypothetical protein
LOC_Os11g18340NANA11+10320167..10320388lupeol synthase, putative
LOC_Os11g18350NANA11+10327058..10327950retrotransposon protein, putative, unclassified
LOC_Os11g18366OsAffx.18919.1.S1_at11/1111+10330124..10354479Cycloartenol synthase, putative, expressed
LOC_Os11g18366Os.23471.3.S1_at11/1111+10330124..10354479Cycloartenol synthase, putative, expressed
LOC_Os11g18366OsAffx.7143.1.A1_at11/1111+10330124..10354479Cycloartenol synthase, putative, expressed
LOC_Os11g18366Os.23471.1.S1_at10/1111+10330124..10354479Cycloartenol synthase, putative, expressed
LOC_Os11g18366Os.23471.2.S1_at10/1111+10330124..10354479Cycloartenol synthase, putative, expressed
LOC_Os11g18366OsAffx.18919.1.S1_s_at10/1111+10330124..10354479Cycloartenol synthase, putative, expressed
LOC_Os11g18366Os.23471.2.S1_x_at10/1111+10330124..10354479Cycloartenol synthase, putative, expressed
LOC_Os11g18366OsAffx.16572.1.S1_x_at2/1111+10330124..10354479Cycloartenol synthase, putative, expressed
LOC_Os11g18366OsAffx.16572.4.S1_x_at2/1111+10330124..10354479Cycloartenol synthase, putative, expressed
LOC_Os11g18366OsAffx.16572.4.S1_at1/1111+10330124..10354479Cycloartenol synthase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31038.1.S1_at--1144--5951Chr11:10312101..10312125 (25 bp)
GAGAATCTTGGTGTCGTGAGTACGA
LOC_Os11g18330
OsAffx.31038.1.S1_at--684--3991Chr11:10312115..10312139 (25 bp)
CGTGAGTACGATGATATGTTGTTAT
LOC_Os11g18330
OsAffx.31038.1.S1_at--765--6611NONE
GTTGTTATCGAGAAAAAACCTTCAT
NONE
OsAffx.31038.1.S1_at--707--2351Chr11:10312286..10312310 (25 bp)
AAACCTTCATTCATCTTTTCTTCCA
LOC_Os11g18330
OsAffx.31038.1.S1_at--124--1751Chr11:10312288..10312312 (25 bp)
ACCTTCATTCATCTTTTCTTCCAAT
LOC_Os11g18330
OsAffx.31038.1.S1_at--264--131Chr11:10312294..10312318 (25 bp)
ATTCATCTTTTCTTCCAATGTCCTT
LOC_Os11g18330
OsAffx.31038.1.S1_at--549--431Chr11:10312298..10312322 (25 bp)
ATCTTTTCTTCCAATGTCCTTTCAG
LOC_Os11g18330
OsAffx.31038.1.S1_at--229--10332Chr11:10312302..10312326 (25 bp)
TTTCTTCCAATGTCCTTTCAGCTCT
LOC_Os11g18330
OsAffx.31038.1.S1_at--880--3671Chr11:10312316..10312340 (25 bp)
CTTTCAGCTCTCAATGTTGGGCTCA
LOC_Os11g18330
OsAffx.31038.1.S1_at--19--1551Chr11:10312321..10312345 (25 bp)
AGCTCTCAATGTTGGGCTCAATTTG
LOC_Os11g18330
OsAffx.31038.1.S1_at--571--9672Chr11:10312326..10312350 (25 bp)
TCAATGTTGGGCTCAATTTGGAATA
LOC_Os11g18330
Target Sequence 
GAGAATCTTGGTGTCGTGAGTACGATGATATGTTGTTATCGAGAAAAAACCTTCATTCATCTTTTCTTCCAATGTCCTTT
CAGCTCTCAATGTTGGGCTCAATTTGGAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31038.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis