Browse Element(s) Details


OsAffx.31080.1.S1_at

Description tigr:9639.m01954
TID=OsAffx.31080.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2186011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g21830OsAffx.22385.1.S1_x_at7/1111+12054553..12060015retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g21830Os.46862.1.S1_at3/1111+12054553..12060015retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g21830OsAffx.20329.1.S1_at1/1111+12054553..12060015retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g21840Os.36736.1.S1_x_at2/1111+12062359..12065692retrotransposon protein, putative, unclassified
LOC_Os11g21840Os.46995.1.S1_x_at1/1111+12062359..12065692retrotransposon protein, putative, unclassified
LOC_Os11g21840Os.21387.3.S1_at1/1111+12062359..12065692retrotransposon protein, putative, unclassified
LOC_Os11g21840OsAffx.18435.1.S1_x_at1/1111+12062359..12065692retrotransposon protein, putative, unclassified
LOC_Os11g21840Os.36736.1.S1_at1/1111+12062359..12065692retrotransposon protein, putative, unclassified
LOC_Os11g21840Os.21387.3.S1_x_at1/1111+12062359..12065692retrotransposon protein, putative, unclassified
LOC_Os11g21850OsAffx.1646.1.S1_x_at1/1111+12066462..12071866retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g21860OsAffx.31080.1.S1_at11/1111+12072435..12074139hypothetical protein
LOC_Os11g21870Os.45173.1.S1_x_at1/1111+12075131..12078258retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g21880OsAffx.18924.4.S1_at10/1111+12078314..12079268hypothetical protein
LOC_Os11g21880OsAffx.18924.2.S1_x_at7/1111+12078314..12079268hypothetical protein
LOC_Os11g21880OsAffx.19842.1.S1_at2/1111+12078314..12079268hypothetical protein
LOC_Os11g21890OsAffx.411.1.S1_at2/1111+12082901..12087291transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g21900OsAffx.13681.1.S1_at1/1111+12091952..12093460retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g21910Os.39431.1.S1_x_at1/1111+12097925..12099198retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31080.1.S1_at--588--3831Chr11:12073085..12073109 (25 bp)
CTGCTTGTGCTTGGCTTGGCCCAAA
LOC_Os11g21860
OsAffx.31080.1.S1_at--70--5191Chr11:12073174..12073198 (25 bp)
GCAATCACTTGCTAGAGGGAGACGA
LOC_Os11g21860
OsAffx.31080.1.S1_at--419--3771Chr11:12073511..12073535 (25 bp)
CTCTAATATATGTTGCGGCTTTGCC
LOC_Os11g21860
OsAffx.31080.1.S1_at--15--1191Chr11:12073727..12073750 (24 bp)
AGTACCAGAGCACACTCGATTCTTG
LOC_Os11g21860
OsAffx.31080.1.S1_at--680--10551Chr11:12073745..12073769 (25 bp)
TTCTTGGCTCTTGGATTCGTTAGGC
LOC_Os11g21860
OsAffx.31080.1.S1_at--79--8351Chr11:12073787..12073811 (25 bp)
GGCGGCGAGATCCACTGTAAAATTC
LOC_Os11g21860
OsAffx.31080.1.S1_at--396--5791Chr11:12073819..12073843 (25 bp)
GAGCGAATTCAACCCGGAGGCGACA
LOC_Os11g21860
OsAffx.31080.1.S1_at--200--1631Chr11:12073932..12073956 (25 bp)
AGCGGCGGTAGAACACTCTGCAGAG
LOC_Os11g21860
OsAffx.31080.1.S1_at--704--8011Chr11:12073965..12073989 (25 bp)
GGAGGAACGAGCTTCTGAACCTACT
LOC_Os11g21860
OsAffx.31080.1.S1_at--864--5431Chr11:12073981..12074005 (25 bp)
GAACCTACTCTGCAGATCATGAAGA
LOC_Os11g21860
OsAffx.31080.1.S1_at--227--1291Chr11:12074003..12074027 (25 bp)
AGATGGTGACGAAGACCCGGTCTAA
LOC_Os11g21860
Target Sequence 
CTGCTTGTGCTTGGCTTGGCCCAAAGCCACGGCAGCACCGGAGGGGAAGAGCTCGGCTCTGGGGATCTTGTGGCTGCTTA
CCCCTCTAAGCAATCACTTGCTAGAGGGAGACGATTAGGAAGGTGTGGATTGGGAGTCATGAAAGTTGGTGGAGGTGGAT
TGGGAGGAGGGGCTGCGTGGTTGTCAGAACCTGGGATGGAAATGGAGCTAAGATGTAAAACTCTAATATATGTTGCGGCT
TTGCCAAGTGAAGGAGTACCAGAGCACACTCGATTCTTGGCTCTTGGATTCGTTAGGCGAGGGTTGGTGGAAGGCGGCGG
CGAGATCCACTGTAAAATTCCTAAGCTGAGCGAATTCAACCCGGAGGCGACAAGGGAAGATCTGGATCCAGCGGCGGTAG
AACACTCTGCAGAGGAAACAGGGGAGGAACGAGCTTCTGAACCTACTCTGCAGATCATGAAGATGGTGACGAAGACCCGG
TCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31080.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis