Browse Element(s) Details


OsAffx.31083.1.S1_x_at

Description tigr:9632.m02145
TID=OsAffx.31083.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2313011/11hypothetical protein
LOC_Os05g208603/11hypothetical protein
LOC_Os11g462801/11hypothetical protein
LOC_Os01g364101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g23080OsAffx.31869.5.S1_x_at6/114+13095409..13097869retrotransposon protein, putative, unclassified
LOC_Os04g23080Os.48015.1.A1_at4/114+13095409..13097869retrotransposon protein, putative, unclassified
LOC_Os04g23080Os.48015.1.A1_x_at4/114+13095409..13097869retrotransposon protein, putative, unclassified
LOC_Os04g23080OsAffx.31869.2.S1_at1/114+13095409..13097869retrotransposon protein, putative, unclassified
LOC_Os04g23080OsAffx.31869.4.S1_x_at1/114+13095409..13097869retrotransposon protein, putative, unclassified
LOC_Os04g23090OsAffx.28472.1.S1_x_at11/114+13099683..13099883hypothetical protein
LOC_Os04g23100OsAffx.13933.1.S1_at11/114+13105363..13107194hypothetical protein
LOC_Os04g23100OsAffx.13933.1.S1_x_at11/114+13105363..13107194hypothetical protein
LOC_Os04g23109NANA4+13113156..13114003NA
LOC_Os04g23120OsAffx.13934.1.S1_at11/114+13115131..13116702hypothetical protein
LOC_Os04g23130OsAffx.31083.1.S1_x_at11/114+13117683..13118237hypothetical protein
LOC_Os04g23130OsAffx.31083.1.S1_at11/114+13117683..13118237hypothetical protein
LOC_Os04g23140Os.27641.1.A1_at11/114+13129401..13130778expressed protein
LOC_Os04g23140OsAffx.3864.1.S1_x_at11/114+13129401..13130778expressed protein
LOC_Os04g23150OsAffx.13935.1.S1_at10/114+13137807..13138793hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31083.1.S1_x_at--275--3931Chr04:13118090..13118114 (25 bp)
CGGCTTCGGGTTGGCGAGGCGCACT
LOC_Os04g23130
OsAffx.31083.1.S1_x_at--73--891Chr04:13118074..13118098 (25 bp)
AGGCGCACTGCGAGGCCGACTTTGC
LOC_Os04g23130
OsAffx.31083.1.S1_x_at--308--8411Chr04:13118061..13118085 (25 bp)
GGCCGACTTTGCAGGCGGGAGACAT
LOC_Os04g23130
OsAffx.31083.1.S1_x_at--133--7191Chr04:13118024..13118048 (25 bp)
GTCGGCTTTGCAGACAACAGACGTA
LOC_Os04g23130
OsAffx.31083.1.S1_x_at--1143--8291Chr04:13118021..13118045 (25 bp)
GGCTTTGCAGACAACAGACGTAGGT
LOC_Os04g23130
OsAffx.31083.1.S1_x_at--301--2471Chr04:13118009..13118033 (25 bp)
AACAGACGTAGGTCGGAGGCCTTGC
LOC_Os04g23130
OsAffx.31083.1.S1_x_at--217--6231Chr04:13117994..13118018 (25 bp)
GAGGCCTTGCAGACGAAGGAAGCAA
LOC_Os04g23130
OsAffx.31083.1.S1_x_at--809--3391Chr04:13117985..13118009 (25 bp)
CAGACGAAGGAAGCAACGGTTGAGT
LOC_Os04g23130
OsAffx.31083.1.S1_x_at--578--2973Chr08:7317235..7317258 (24 bp)
AATGGGCGGCTTGGAGGCGACGACT
NONE
OsAffx.31083.1.S1_x_at--253--8012Chr05:12233681..12233705 (25 bp)
GGAGGCGACGACTTTCGGCTCGCAT
LOC_Os05g20860
OsAffx.31083.1.S1_x_at--380--9455Chr08:7317261..7317285 (25 bp)
TCGGCTCGCATCCTATGTGTTCGAT
NONE
Target Sequence 
CGGCTTCGGGTTGGCGAGGCGCACTGCGAGGCCGACTTTGCAGGCGGGAGACATGGAGGCAGGGGCGTCGGCTTTGCAGA
CAACAGACGTAGGTCGGAGGCCTTGCAGACGAAGGAAGCAACGGTTGAGTTCNTNGCNNNNNGNNGCNNNGGNNNGAGGG
NCGGCGNCGGTTGGGCGCNGNGGCTNCGAGGGCAGCGCTGGGCGCGGCAGGGCATCNGGCAGAGGCGGGGCAGAGGCGNN
CGTCAGCTTTGCACAGCCTTGCAGNGAGATTCGCGGGCAGAGGANGAATGGGCGGCTTGGAGGCGACGACTTTCGGCTCG
CATCCTATGTGTTCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31083.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis