Browse Element(s) Details


OsAffx.31107.1.S1_at

Description tigr:9639.m02141
TID=OsAffx.31107.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0941011/11hypothetical protein
LOC_Os11g2426011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g09370Os.21811.1.S1_at11/119+5020749..5028455phototropic-responsive NPH3 family protein, putative, expressed
LOC_Os09g09370OsAffx.29776.1.S1_x_at11/119+5020749..5028455phototropic-responsive NPH3 family protein, putative, expressed
LOC_Os09g09380NANA9+5032798..5033265hypothetical protein
LOC_Os09g09390NANA9+5040642..5041948transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g09400NANA9+5046339..5050853retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g09410OsAffx.31107.1.S1_at11/119+5051240..5051806hypothetical protein
LOC_Os09g09420Os.45976.1.S1_x_at4/119+5056137..5064493transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g09420Os.45976.1.S1_at1/119+5056137..5064493transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g09420OsAffx.17299.1.S1_at1/119+5056137..5064493transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g09430OsAffx.31869.5.S1_x_at2/119+5073754..5075376retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31107.1.S1_at--1061--3792Chr11:13321138..13321162 (25 bp)
CTCCGCTAATTACTATCCAGGTCTT
LOC_Os11g24260
OsAffx.31107.1.S1_at--366--6052Chr11:13321178..13321202 (25 bp)
GAGATTGACACTCCAGGACTATTCT
LOC_Os11g24260
OsAffx.31107.1.S1_at--43--8112Chr11:13321193..13321217 (25 bp)
GGACTATTCTTAGCTGGCCTGGTTC
LOC_Os11g24260
OsAffx.31107.1.S1_at--117--8432Chr11:13321208..13321232 (25 bp)
GGCCTGGTTCGTGCTATGGATAGAT
LOC_Os11g24260
OsAffx.31107.1.S1_at--372--2652Chr11:13321302..13321326 (25 bp)
AACCACTCGGGCATCAAGGACATTT
LOC_Os11g24260
OsAffx.31107.1.S1_at--375--8652Chr11:13321345..13321369 (25 bp)
TGGGAATCATGAACTCCAGCCTCTT
LOC_Os11g24260
OsAffx.31107.1.S1_at--119--10292Chr11:13321378..13321402 (25 bp)
TTTGCCTCCTCCCATGGGTATTTAT
LOC_Os11g24260
OsAffx.31107.1.S1_at--1140--5832Chr11:13321419..13321443 (25 bp)
GAGCCCGCATGAGAGTTGGTTTTCA
LOC_Os11g24260
OsAffx.31107.1.S1_at--1007--1372Chr11:13321465..13321489 (25 bp)
AGACCCTGCACTTGCTGGAGATCCG
LOC_Os11g24260
OsAffx.31107.1.S1_at--1128--7553Chr11:13321499..13321523 (25 bp)
GGGCCATTCTATGAGTTCGAGCGGA
LOC_Os11g24260
OsAffx.31107.1.S1_at--949--5593Chr11:13321530..13321554 (25 bp)
GACAATACCGTTTGACTATGGCCAC
LOC_Os11g24260
Target Sequence 
CTCCGCTAATTACTATCCAGGTCTTGAGGGAAACATGAGAGAGATTGACACTCCAGGACTATTCTTAGCTGGCCTGGTTC
GTGCTATGGATAGATATCTCGCAAAAACTATAACTGAGTTGCGTAGATTGCAAGCTAGGGTGGTCATGCTTGATAGACGA
ATAGAACCACTCGGGCATCAAGGACATTTTGATAATGCCATCATTTATGGGAATCATGAACTCCAGCCTCTTACAGAGAC
TTTGCCTCCTCCCATGGGTATTTATCATAATATAAACACTAGAGCCCGCATGAGAGTTGGTTTTCATCGAAATCGTCGAA
CCATGCCAGACCCTGCACTTGCTGGAGATCCGGTGCTGCTGGGGCCATTCTATGAGTTCGAGCGGAATGGGAGACAATAC
CGTTTGACTATGGCCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31107.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis