Browse Element(s) Details


OsAffx.31148.1.S1_at

Description tigr:9639.m02407
TID=OsAffx.31148.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2693011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g26910Os.37924.1.S1_x_at11/1111+14959197..14962095SKP1-like protein 1B, putative, expressed
LOC_Os11g26910Os.46772.1.S1_at10/1111+14959197..14962095SKP1-like protein 1B, putative, expressed
LOC_Os11g26910OsAffx.6724.2.S1_s_at1/1111+14959197..14962095SKP1-like protein 1B, putative, expressed
LOC_Os11g26920Os.52242.1.S1_at1/1111+14972543..14975984transposon protein, putative, Mariner sub-class, expressed
LOC_Os11g26930OsAffx.31148.1.S1_at11/1111+14985500..14986961hypothetical protein
LOC_Os11g26940NANA11+14991421..14991882retrotransposon protein, putative, unclassified
LOC_Os11g26950Os.50422.1.S1_at11/1111+14996568..14998294Flavonol 3-O-glucosyltransferase, putative, expressed
LOC_Os11g26956NANA11+15008414..15008995hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31148.1.S1_at--501--6111Chr11:14985582..14985606 (25 bp)
GAGGCGACGCCGAGGATAACCTTGC
LOC_Os11g26930
OsAffx.31148.1.S1_at--749--351Chr11:14985597..14985621 (25 bp)
ATAACCTTGCCACTGCAATGCCGAA
LOC_Os11g26930
OsAffx.31148.1.S1_at--523--8031Chr11:14986275..14986299 (25 bp)
GGAGAAATTACTCAACGTCGCCGCC
LOC_Os11g26930
OsAffx.31148.1.S1_at--124--7151Chr11:14986385..14986409 (25 bp)
GTCTTCATATAAGATGCAGTGCCGC
LOC_Os11g26930
OsAffx.31148.1.S1_at--124--4071Chr11:14986464..14986488 (25 bp)
CGAGGCGCCGACAGGATCACAGGAA
LOC_Os11g26930
OsAffx.31148.1.S1_at--922--7952Chr11:14986477..14986501 (25 bp)
GGATCACAGGAACGTGACACGCACC
LOC_Os11g26930
OsAffx.31148.1.S1_at--820--2571Chr11:14986492..14986516 (25 bp)
GACACGCACCCCACGGACGGTAAGG
LOC_Os11g26930
OsAffx.31148.1.S1_at--803--4411Chr11:14986526..14986550 (25 bp)
GCCAGCTGCACGAACGGGTTGATGT
LOC_Os11g26930
OsAffx.31148.1.S1_at--773--6651Chr11:14986543..14986567 (25 bp)
GTTGATGTGGCCGAACGCAAGGAAC
LOC_Os11g26930
OsAffx.31148.1.S1_at--907--8151Chr11:14986563..14986587 (25 bp)
GGAACGGGAACAACGCTACGTGCAA
LOC_Os11g26930
OsAffx.31148.1.S1_at--70--2611Chr11:14986574..14986598 (25 bp)
AACGCTACGTGCAACGTTTCGCCGG
LOC_Os11g26930
Target Sequence 
GAGGCGACGCCGAGGATAACCTTGCCACTGCAATGCCGAAGGTGGAGACGGCGACGTCGGCCGGCGCACTGGCTAGGCGG
AAGGGGCTGCCGGAGTGGGTGCCGACGAGAACGAGGGAGGGGCGGCGCGGACGACGGCGTTCGGGCGAAATTCGGGCGAG
GAGATGGGGGAAATTAGGGGGAATTGAAGAGGAAGGAATTACGGAGAAATTACTCAACGTCGCCGCCTCTGCCTCGCCGT
CGGCCGTCTTCCGTCTTCCGTCGTCGTCCATCGTCGCGCCACACCTCGGTGAGTTCCCCACGTCGTGCTCTTGTCTTCAT
ATAAGATGCAGTGCCGCGACGGCGACGGCCGCGGGCAGCATGGCCTCGACGTGGGCCACGTTGGCCGCCGCCGAGGCGCC
GACAGGATCACAGGAACGTGACACGCACCCCACGGACGGTAAGGAGGCTACGGGCCAGCTGCACGAACGGGTTGATGTGG
CCGAACGCAAGGAACGGGAACAACGCTACGTGCAACGTTTCGCCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31148.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis