Browse Element(s) Details


Os.50422.1.S1_at

Description gb:AK121144.1
DB_XREF= gi:37990767
TID=Os.50422.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50422 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023078A01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023078A01, full insert sequence.
FL= gb:AK121144.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2695011/11Flavonol 3-O-glucosyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g26920Os.52242.1.S1_at1/1111+14972543..14975984transposon protein, putative, Mariner sub-class, expressed
LOC_Os11g26930OsAffx.31148.1.S1_at11/1111+14985500..14986961hypothetical protein
LOC_Os11g26940NANA11+14991421..14991882retrotransposon protein, putative, unclassified
LOC_Os11g26950Os.50422.1.S1_at11/1111+14996568..14998294Flavonol 3-O-glucosyltransferase, putative, expressed
LOC_Os11g26956NANA11+15008414..15008995hypothetical protein
LOC_Os11g26962Os.49350.1.S1_at1/1111+15012727..15013784NA
LOC_Os11g26970Os.6901.1.S1_at1/1111+15017628..15019724hypothetical protein
LOC_Os11g26980NANA11+15021510..15023184hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50422.1.S1_at--231--671Chr11:14997023..14997047 (25 bp)
ATGAAGGGCGACCAGTACCTCAACG
LOC_Os11g26950
Os.50422.1.S1_at--913--9692Chr11:14996782..14996806 (25 bp)
TCAAGGGCTGAAAACGGAACGTCAC
LOC_Os11g26950
Os.50422.1.S1_at--942--5451Chr11:14996766..14996790 (25 bp)
GAACGTCACGCGTCGTTAATCAGAT
LOC_Os11g26950
Os.50422.1.S1_at--349--6391Chr11:14996744..14996768 (25 bp)
GATCGACAGCTGTCACAACTCTGAA
LOC_Os11g26950
Os.50422.1.S1_at--846--2271Chr11:14996717..14996741 (25 bp)
AAATCGGACTCTGTTCTGAAGACTG
LOC_Os11g26950
Os.50422.1.S1_at--32--3271Chr11:14996678..14996702 (25 bp)
CAACGGCTGTGATTGCTTGATACTG
LOC_Os11g26950
Os.50422.1.S1_at--282--71Chr11:14996667..14996691 (25 bp)
ATTGCTTGATACTGCATCGCGGTTC
LOC_Os11g26950
Os.50422.1.S1_at--204--4691Chr11:14996649..14996673 (25 bp)
GCGGTTCTCGCTCTAGGGAGTACTA
LOC_Os11g26950
Os.50422.1.S1_at--753--7631Chr11:14996634..14996658 (25 bp)
GGGAGTACTACATCCGTCATAAAAT
LOC_Os11g26950
Os.50422.1.S1_at--327--5111Chr11:14996592..14996616 (25 bp)
GCACTGGTTATATCCAACGTCTGAC
LOC_Os11g26950
Os.50422.1.S1_at--601--3211Chr11:14996578..14996602 (25 bp)
CAACGTCTGACTTAACGTCTTATTT
LOC_Os11g26950
Target Sequence 
ATGAAGGGCGACCAGTACCTCAACGCCGCGCTGTTCGCGCGCGAGCTCCGCGGGCACCGAGGTCGCGCGCCGCGCCCGCG
ACGGGTGGTTCGGGCGTGAGGACGTGCGCGACGCGCTGGCGGCGGCGTTCGCCGGAGGAGAAGACGGCGGCGGCGAGGAG
AAGAAATGGCGGGAGTTCTTGATGGACGACGCCGTGCAGAGGAGGTTCGTGCGGGAGTTCGTGGCGGAGCTGAGAAGGCT
CAAGGGCTGAAAACGGAACGTCACGCGTCGTTAATCAGATCGACAGCTGTCACAACTCTGAAGAAAATCGGACTCTGTTC
TGAAGACTGTGAAGAGAAGGAATCAACGGCTGTGATTGCTTGATACTGCATCGCGGTTCTCGCTCTAGGGAGTACTACAT
CCGTCATAAAATAAAATAAGTGCAGTTTTGCACTGGTTATATCCAACGTCTGACTTAACGTCTTATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50422.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis