Browse Element(s) Details


Os.49350.1.S1_at

Description gb:AK120585.1
DB_XREF= gi:37990208
TID=Os.49350.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49350 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013139A20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013139A20, full insert sequence.
FL= gb:AK120585.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g269621/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g26940NANA11+14991421..14991882retrotransposon protein, putative, unclassified
LOC_Os11g26950Os.50422.1.S1_at11/1111+14996568..14998294Flavonol 3-O-glucosyltransferase, putative, expressed
LOC_Os11g26956NANA11+15008414..15008995hypothetical protein
LOC_Os11g26962Os.49350.1.S1_at1/1111+15012727..15013784NA
LOC_Os11g26970Os.6901.1.S1_at1/1111+15017628..15019724hypothetical protein
LOC_Os11g26980NANA11+15021510..15023184hypothetical protein
LOC_Os11g26990OsAffx.31153.1.S1_x_at11/1111+15031227..15033569expressed protein
LOC_Os11g26990Os.51855.1.S1_at10/1111+15031227..15033569expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49350.1.S1_at--74--5931Chr08:28181284..28181308 (25 bp)
GAGCTTGCAGCATGAATTGGAACAC
NONE
Os.49350.1.S1_at--861--7931Chr08:28181432..28181456 (25 bp)
GGATTATCTGCAGTACGGCACTTGC
NONE
Os.49350.1.S1_at--115--1192Chr08:28181443..28181467 (25 bp)
AGTACGGCACTTGCAGTAGCAGCCA
NONE
Os.49350.1.S1_at--1063--6951Chr08:28181458..28181482 (25 bp)
GTAGCAGCCACTGACATTGAATGTG
NONE
Os.49350.1.S1_at--1034--2971Chr08:28181477..28181501 (25 bp)
AATGTGGGCAGTACTTCCTTGTTGA
NONE
Os.49350.1.S1_at--800--10792Chr11:15013175..15013195 (21 bp)
TTGTTGATTCCTGACTCCCATATAA
LOC_Os11g26962
Os.49350.1.S1_at--707--9871Chr08:28181541..28181565 (25 bp)
TACATTACGTCGACAGTGACCGTGC
NONE
Os.49350.1.S1_at--1154--7371Chr08:28181556..28181580 (25 bp)
GTGACCGTGCTTTCAGATTCAGCAT
NONE
Os.49350.1.S1_at--479--10111Chr08:28181789..28181810 (22 bp)
TATGTGGCTTATATCGATTGACCGA
NONE
Os.49350.1.S1_at--1115--431Chr08:28181855..28182027 (25 bp)
ATCTTCACTCAGGTTTTCCTCTCTT
NONE
Os.49350.1.S1_at--999--10591Chr08:28182091..28182115 (25 bp)
TTCGTGCCTGGTAGTGCGACTTTAT
NONE
Target Sequence 
GAGCTTGCAGCATGAATTGGAACACAAAAATGGGGATTATCTGCAGTACGGCACTTGCAGTAGCAGCCACTGACATTGAA
TGTGGGCAGTACTTCCTTGTTGATTCCTGACTCCCATATAAACAAAGAGGACTTGGAGCTGCTACATTACGTCGACAGTG
ACCGTGCTTTCAGATTCAGCATATGTGGCTTATATCGATTGACCGATCGAGGCGTGGCCCGTGCTGACCAACGGCGTTGC
CGCGGCTGCCATCTTCACTCAGGTTTTCCTCTCTTTGTCAAAACTACAAGGGAAGGCCATGTATGCCATGGGACTGATTG
CACTGCAGAACAAGTTCCTTCGTGCCTGGTAGTGCGACTTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49350.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis