Browse Element(s) Details


Os.51855.1.S1_at

Description gb:AK064092.1
DB_XREF= gi:32974110
TID=Os.51855.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51855 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-100-E08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-100-E08, full insert sequence.
FL= gb:AK064092.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2699010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g26956NANA11+15008414..15008995hypothetical protein
LOC_Os11g26962Os.49350.1.S1_at1/1111+15012727..15013784NA
LOC_Os11g26970Os.6901.1.S1_at1/1111+15017628..15019724hypothetical protein
LOC_Os11g26980NANA11+15021510..15023184hypothetical protein
LOC_Os11g26990OsAffx.31153.1.S1_x_at11/1111+15031227..15033569expressed protein
LOC_Os11g26990Os.51855.1.S1_at10/1111+15031227..15033569expressed protein
LOC_Os11g27000OsAffx.7213.1.S1_at11/1111+15052590..15053912hypothetical protein
LOC_Os11g27010OsAffx.31154.1.S1_at11/1111+15056926..15057252hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51855.1.S1_at--1144--1471Chr11:15031463..15031487 (25 bp)
AGCAATGGCGATGAATCCATCCAAT
LOC_Os11g26990
Os.51855.1.S1_at--222--591NONE
ATCCACTATGGACTCAATGCGTTGC
NONE
Os.51855.1.S1_at--157--8131Chr11:15031431..15031455 (25 bp)
GGACTCAATGCGTTGCATCAACCAG
LOC_Os11g26990
Os.51855.1.S1_at--1101--1471Chr11:15031408..15031432 (25 bp)
AGCAATGGATTGCTCACTGTATTTG
LOC_Os11g26990
Os.51855.1.S1_at--286--3331Chr11:15031394..15031418 (25 bp)
CACTGTATTTGTGCTCCTTTTTAAT
LOC_Os11g26990
Os.51855.1.S1_at--960--7291Chr11:15031384..15031408 (25 bp)
GTGCTCCTTTTTAATTGCTCGAATT
LOC_Os11g26990
Os.51855.1.S1_at--630--271Chr11:15031300..15031324 (25 bp)
ATATGTGTACCCAATGGTTTCAGAG
LOC_Os11g26990
Os.51855.1.S1_at--460--1351Chr11:15031279..15031303 (25 bp)
AGAGAGATTGGGTCTGGTAATTACA
LOC_Os11g26990
Os.51855.1.S1_at--127--3151Chr11:15031261..15031285 (25 bp)
AATTACAGGGCTGTCACTCTGGCAT
LOC_Os11g26990
Os.51855.1.S1_at--182--8351Chr11:15031253..15031277 (25 bp)
GGCTGTCACTCTGGCATGCTCAATG
LOC_Os11g26990
Os.51855.1.S1_at--724--8251Chr11:15031241..15031265 (25 bp)
GGCATGCTCAATGTAATAAAGCTTA
LOC_Os11g26990
Target Sequence 
AGCAATGGCGATGAATCCATCCAATCCACTATGGACTCAATGCGTTGCATCAACCAGCAATGGATTGCTCACTGTATTTG
TGCTCCTTTTTAATTGCTCGAATTTTTCTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTTGAAGTTTGTGTAGATATAT
GATATATGTGTACCCAATGGTTTCAGAGAGATTGGGTCTGGTAATTACAGGGCTGTCACTCTGGCATGCTCAATGTAATA
AAGCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51855.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis