Browse Element(s) Details


OsAffx.7213.1.S1_at

Description tigr:9639.m02416
TID=OsAffx.7213.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2700011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g26990OsAffx.31153.1.S1_x_at11/1111+15031227..15033569expressed protein
LOC_Os11g26990Os.51855.1.S1_at10/1111+15031227..15033569expressed protein
LOC_Os11g27000OsAffx.7213.1.S1_at11/1111+15052590..15053912hypothetical protein
LOC_Os11g27010OsAffx.31154.1.S1_at11/1111+15056926..15057252hypothetical protein
LOC_Os11g27020OsAffx.7214.1.S1_at11/1111+15060603..15062746hypothetical protein
LOC_Os11g27030OsAffx.19034.1.S1_at11/1111+15064273..15064782MATH domain containing protein
LOC_Os11g27040NANA11+15069137..15070363hypothetical protein
LOC_Os11g27050OsAffx.20329.1.S1_at5/1111+15070712..15075628retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7213.1.S1_at--659--691Chr11:15052674..15052698 (25 bp)
ATGAGCTTGAGCGATGCATCGTCCC
LOC_Os11g27000
OsAffx.7213.1.S1_at--962--631Chr11:15052687..15052711 (25 bp)
ATGCATCGTCCCATCTTGGCCGTTG
LOC_Os11g27000
OsAffx.7213.1.S1_at--941--10831Chr11:15052702..15052726 (25 bp)
TTGGCCGTTGTGTTCTTCGGCCGCA
LOC_Os11g27000
OsAffx.7213.1.S1_at--749--7231Chr11:15052735..15052759 (25 bp)
GTCGCGCTCGCATTGATGGCAACCT
LOC_Os11g27000
OsAffx.7213.1.S1_at--708--10631Chr11:15052769..15052793 (25 bp)
TTCCCTTATACAAGCCCGAGAGCGT
LOC_Os11g27000
OsAffx.7213.1.S1_at--394--7631Chr11:15052921..15052945 (25 bp)
GGGAGCAAAAGTGCGGCCCTCACTC
LOC_Os11g27000
OsAffx.7213.1.S1_at--566--4251Chr11:15052938..15052962 (25 bp)
CCTCACTCAAGTCTAGGGCGGTGGA
LOC_Os11g27000
OsAffx.7213.1.S1_at--174--8551Chr11:15052959..15052983 (25 bp)
TGGAGTTGTGTTAGCGGTCGTCTTC
LOC_Os11g27000
OsAffx.7213.1.S1_at--872--6172Chr11:15053827..15053851 (25 bp)
GAGGAGAGAGGTTTCCAACCCTCCA
LOC_Os11g27000
OsAffx.7213.1.S1_at--495--3251Chr11:15053842..15053866 (25 bp)
CAACCCTCCAACAGAACATCATGTA
LOC_Os11g27000
OsAffx.7213.1.S1_at--869--3551Chr11:15053858..15053882 (25 bp)
CATCATGTATATAAACCTAACCGTT
LOC_Os11g27000
Target Sequence 
ATGAGCTTGAGCGATGCATCGTCCCATCTTGGCCGTTGTGTTCTTCGGCCGCACCCTGTCGGTCGCGCTCGCATTGATGG
CAACCTCTCTTCCTCTTCCCTTATACAAGCCCGAGAGCGTCGGTGGCGCGATGCCCAGACAGGCTCCAGCTCCGCCCTCA
CCGTACGTCGGAGGAGGCGGAGGAGGGGACTGAGCCACGTCAGGGGCCACAACCAGAAGTGGATGGGGGAACGAAGAGGG
GAGGAGGGGGAGCAAAAGTGCGGCCCTCACTCAAGTCTAGGGCGGTGGAGTTGTGTTAGCGGTCGTCTTCTTCCCCAGTC
GTCGTGCCCGCCTTCCATCTCACGAGGAGAGAGGTTTCCAACCCTCCAACAGAACATCATGTATATAAACCTAACCGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7213.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis