Browse Element(s) Details


OsAffx.31154.1.S1_at

Description tigr:9639.m02417
TID=OsAffx.31154.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2701011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g26990OsAffx.31153.1.S1_x_at11/1111+15031227..15033569expressed protein
LOC_Os11g26990Os.51855.1.S1_at10/1111+15031227..15033569expressed protein
LOC_Os11g27000OsAffx.7213.1.S1_at11/1111+15052590..15053912hypothetical protein
LOC_Os11g27010OsAffx.31154.1.S1_at11/1111+15056926..15057252hypothetical protein
LOC_Os11g27020OsAffx.7214.1.S1_at11/1111+15060603..15062746hypothetical protein
LOC_Os11g27030OsAffx.19034.1.S1_at11/1111+15064273..15064782MATH domain containing protein
LOC_Os11g27040NANA11+15069137..15070363hypothetical protein
LOC_Os11g27050OsAffx.20329.1.S1_at5/1111+15070712..15075628retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g27060NANA11+15081191..15083908retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31154.1.S1_at--1042--7511Chr11:15056961..15056985 (25 bp)
GTGGAGGGCCGAGCCAACACATGCT
LOC_Os11g27010
OsAffx.31154.1.S1_at--590--8411Chr11:15056967..15056991 (25 bp)
GGCCGAGCCAACACATGCTGTGATT
LOC_Os11g27010
OsAffx.31154.1.S1_at--44--4871Chr11:15057033..15057057 (25 bp)
GCTAGATCAACATCCTATTGGGCAG
LOC_Os11g27010
OsAffx.31154.1.S1_at--331--31Chr11:15057049..15057073 (25 bp)
ATTGGGCAGATCTTATGTCCTTCTA
LOC_Os11g27010
OsAffx.31154.1.S1_at--623--771Chr11:15057063..15057087 (25 bp)
ATGTCCTTCTAGACGGATCCTGTGT
LOC_Os11g27010
OsAffx.31154.1.S1_at--893--7971Chr11:15057077..15057101 (25 bp)
GGATCCTGTGTGTCTCCAGTGAGAG
LOC_Os11g27010
OsAffx.31154.1.S1_at--788--7151Chr11:15057088..15057112 (25 bp)
GTCTCCAGTGAGAGGTACAGATCCT
LOC_Os11g27010
OsAffx.31154.1.S1_at--756--7831Chr11:15057101..15057125 (25 bp)
GGTACAGATCCTTGAAAGCAACTCT
LOC_Os11g27010
OsAffx.31154.1.S1_at--865--8951Chr11:15057113..15057137 (25 bp)
TGAAAGCAACTCTTGATGACGACGA
LOC_Os11g27010
OsAffx.31154.1.S1_at--777--7492Chr11:15057149..15057173 (25 bp)
GTGGTGGGCATATGCTCTGCAGACA
LOC_Os11g27010
OsAffx.31154.1.S1_at--960--10131Chr11:15057159..15057183 (25 bp)
TATGCTCTGCAGACATGGCGTGGTG
LOC_Os11g27010
Target Sequence 
GTGGAGGGCCGAGCCAACACATGCTGTGATTGAGGATGGCAGAGTAATGGTCATAGAGGTGGCGGTGGGGATGCTAGATC
AACATCCTATTGGGCAGATCTTATGTCCTTCTAGACGGATCCTGTGTGTCTCCAGTGAGAGGTACAGATCCTTGAAAGCA
ACTCTTGATGACGACGAGAACGACGTGGGTGGTGGGCATATGCTCTGCAGACATGGCGTGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31154.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis