Browse Element(s) Details


Os.46772.1.S1_at

Description gb:AK111945.1
DB_XREF= gi:37988608
TID=Os.46772.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46772 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-023-D07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-023-D07, full insert sequence.
FL= gb:AK111945.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2691010/11SKP1-like protein 1B, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g26860Os.10151.1.S1_at11/1111+14936469..14939774Serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed
LOC_Os11g26870NANA11+14943526..14943783hypothetical protein
LOC_Os11g26880Os.4638.1.S1_at11/1111+14944641..14945659Rapid ALkalinization Factor family protein, expressed
LOC_Os11g26880OsAffx.8287.1.S1_x_at2/1111+14944641..14945659Rapid ALkalinization Factor family protein, expressed
LOC_Os11g26890OsAffx.19033.1.S1_at11/1111+14946907..14949821expressed protein
LOC_Os11g26890Os.11041.1.S1_s_at11/1111+14946907..14949821expressed protein
LOC_Os11g26900Os.20311.1.S1_at11/1111+14952683..14954831expressed protein
LOC_Os11g26910Os.37924.1.S1_x_at11/1111+14959197..14962095SKP1-like protein 1B, putative, expressed
LOC_Os11g26910Os.46772.1.S1_at10/1111+14959197..14962095SKP1-like protein 1B, putative, expressed
LOC_Os11g26910OsAffx.6724.2.S1_s_at1/1111+14959197..14962095SKP1-like protein 1B, putative, expressed
LOC_Os11g26920Os.52242.1.S1_at1/1111+14972543..14975984transposon protein, putative, Mariner sub-class, expressed
LOC_Os11g26930OsAffx.31148.1.S1_at11/1111+14985500..14986961hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0007067biological_processmitosis
GO:0007140biological_processmale meiosis
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0000151cellular_componentubiquitin ligase complex
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0005819cellular_componentspindle
GO:0009524cellular_componentphragmoplast
GO:0019005cellular_componentSCF ubiquitin ligase complex
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46772.1.S1_at--784--3491Chr11:14961496..14961520 (25 bp)
CATGTGCTAAAGTAATTTGTTTCAG
LOC_Os11g26910
Os.46772.1.S1_at--146--10811Chr11:14961512..14961536 (25 bp)
TTGTTTCAGTTCATAGTGTTCTCAT
LOC_Os11g26910
Os.46772.1.S1_at--11--7431Chr11:14961527..14961551 (25 bp)
GTGTTCTCATTTCTACATTTATGCT
LOC_Os11g26910
Os.46772.1.S1_at--138--191Chr11:14961543..14961567 (25 bp)
ATTTATGCTTTCTTTTATATTCCAA
LOC_Os11g26910
Os.46772.1.S1_at--801--8111NONE
GGACTATGTATTCCTTTTGTGGCTG
NONE
Os.46772.1.S1_at--658--7531Chr11:14961590..14961614 (25 bp)
GTGGCTGAATGTTGATCTGTGCTTT
LOC_Os11g26910
Os.46772.1.S1_at--940--2991Chr11:14961597..14961621 (25 bp)
AATGTTGATCTGTGCTTTAGCCATA
LOC_Os11g26910
Os.46772.1.S1_at--822--8691Chr11:14961607..14961631 (25 bp)
TGTGCTTTAGCCATAGTGATTACTG
LOC_Os11g26910
Os.46772.1.S1_at--650--7411Chr11:14961622..14961646 (25 bp)
GTGATTACTGCTTCTTATACCATGT
LOC_Os11g26910
Os.46772.1.S1_at--366--312Chr11:14961638..14961662 (25 bp)
ATACCATGTTTATTTGATTCTCAAA
LOC_Os11g26910
Os.46772.1.S1_at--205--10271Chr11:14961650..14961674 (25 bp)
TTTGATTCTCAAATCCCACAGGCCG
LOC_Os11g26910
Target Sequence 
CATGTGCTAAAGTAATTTGTTTCAGTTCATAGTGTTCTCATTTCTACATTTATGCTTTCTTTTATATTCCAAAGTTGGAC
TATGTATTCCTTTTGTGGCTGAATGTTGATCTGTGCTTTAGCCATAGTGATTACTGCTTCTTATACCATGTTTATTTGAT
TCTCAAATCCCACAGGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46772.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis