Browse Element(s) Details


Os.11041.1.S1_s_at

Description gb:AK099562.1
DB_XREF= gi:32984771
TID=Os.11041.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11041 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013034L13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013034L13, full insert sequence.
FL= gb:AK099562.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2689011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g26850Os.8240.1.S1_at10/1111+14919682..14922705Adenosylhomocysteinase, putative, expressed
LOC_Os11g26860Os.10151.1.S1_at11/1111+14936469..14939774Serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed
LOC_Os11g26870NANA11+14943526..14943783hypothetical protein
LOC_Os11g26880Os.4638.1.S1_at11/1111+14944641..14945659Rapid ALkalinization Factor family protein, expressed
LOC_Os11g26880OsAffx.8287.1.S1_x_at2/1111+14944641..14945659Rapid ALkalinization Factor family protein, expressed
LOC_Os11g26890OsAffx.19033.1.S1_at11/1111+14946907..14949821expressed protein
LOC_Os11g26890Os.11041.1.S1_s_at11/1111+14946907..14949821expressed protein
LOC_Os11g26900Os.20311.1.S1_at11/1111+14952683..14954831expressed protein
LOC_Os11g26910Os.37924.1.S1_x_at11/1111+14959197..14962095SKP1-like protein 1B, putative, expressed
LOC_Os11g26910Os.46772.1.S1_at10/1111+14959197..14962095SKP1-like protein 1B, putative, expressed
LOC_Os11g26910OsAffx.6724.2.S1_s_at1/1111+14959197..14962095SKP1-like protein 1B, putative, expressed
LOC_Os11g26920Os.52242.1.S1_at1/1111+14972543..14975984transposon protein, putative, Mariner sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010224biological_processresponse to UV-B
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11041.1.S1_s_at--523--10451Chr11:14947573..14947597 (25 bp)
TTAGTCGGATTTATTCTGCTTCAAT
LOC_Os11g26890
Os.11041.1.S1_s_at--498--5591Chr11:14947530..14947554 (25 bp)
GAAATCTGTCACTACAAGGCATCGT
LOC_Os11g26890
Os.11041.1.S1_s_at--433--3211Chr11:14947516..14947540 (25 bp)
CAAGGCATCGTTTGGAGCTGATTCT
LOC_Os11g26890
Os.11041.1.S1_s_at--968--5891Chr11:14947502..14947526 (25 bp)
GAGCTGATTCTTGCTCAGTCACAAG
LOC_Os11g26890
Os.11041.1.S1_s_at--841--10271Chr11:14947474..14947498 (25 bp)
TTTGCCCACCAATTCAGTTTCTGAA
LOC_Os11g26890
Os.11041.1.S1_s_at--550--6111Chr11:14947412..14947436 (25 bp)
GAGTCCATTGGAGGTTCTGCAGAAA
LOC_Os11g26890
Os.11041.1.S1_s_at--333--4831Chr11:14947285..14947309 (25 bp)
GCTCATGCGAAGCTTCTAATCTCAT
LOC_Os11g26890
Os.11041.1.S1_s_at--530--5571Chr11:14947224..14947248 (25 bp)
GAAAGATTTCCTAGAGCCTGATGAG
LOC_Os11g26890
Os.11041.1.S1_s_at--789--6191Chr11:14947202..14947226 (25 bp)
GAGGCAGTGATACTCGATCCGTCAT
LOC_Os11g26890
Os.11041.1.S1_s_at--40--5431Chr11:14947157..14947181 (25 bp)
GAAGCCATTGCATTTGGTTCCTTTC
LOC_Os11g26890
Os.11041.1.S1_s_at--1140--8151Chr11:14947065..14947089 (25 bp)
GGAAACTCCTGATGCCTTGTAAATA
LOC_Os11g26890
Target Sequence 
TTAGTCGGATTTATTCTGCTTCAATAATGTACGGATACTTTCTGAAATCTGTCACTACAAGGCATCGTTTGGAGCTGATT
CTTGCTCAGTCACAAGAATTTTGCCCACCAATTCAGTTTCTGAATGCACAATTTAATAGCACCCAGAAACAAGAACAGGA
AGAGTCCATTGGAGGTTCTGCAGAAATATCATCTTCCTCAAAACCGAGTTCTGTTGTTGATCTGCATGACTTGAAGAGTT
ACATGATGGGCTTTGATCCAAAGACCTTGGAGTTATGCGCAAGGCTGCGCTCATGCGAAGCTTCTAATCTCATTGAGAAG
CACAGTTGGGCACTGTTCAGAGAAAGCATGAAAGATTTCCTAGAGCCTGATGAGGCAGTGATACTCGATCCGTCATCCCT
AAAGAGATTGTTGCTTGAAGCCATTGCATTTGGTTCCTTTCTTTGGGATGTTGAGGATTATGTTGACGAGATTTACAAGT
TGCATGATAGCTGAAAAAAGTACATGCAGGAAACTCCTGATGCCTTGTAAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11041.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis