Browse Element(s) Details


Os.20311.1.S1_at

Description gb:AK060974.1
DB_XREF= gi:32970992
TID=Os.20311.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20311 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-202-E04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-202-E04, full insert sequence.
FL= gb:AK060974.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2690011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g26860Os.10151.1.S1_at11/1111+14936469..14939774Serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed
LOC_Os11g26870NANA11+14943526..14943783hypothetical protein
LOC_Os11g26880Os.4638.1.S1_at11/1111+14944641..14945659Rapid ALkalinization Factor family protein, expressed
LOC_Os11g26880OsAffx.8287.1.S1_x_at2/1111+14944641..14945659Rapid ALkalinization Factor family protein, expressed
LOC_Os11g26890OsAffx.19033.1.S1_at11/1111+14946907..14949821expressed protein
LOC_Os11g26890Os.11041.1.S1_s_at11/1111+14946907..14949821expressed protein
LOC_Os11g26900Os.20311.1.S1_at11/1111+14952683..14954831expressed protein
LOC_Os11g26910Os.37924.1.S1_x_at11/1111+14959197..14962095SKP1-like protein 1B, putative, expressed
LOC_Os11g26910Os.46772.1.S1_at10/1111+14959197..14962095SKP1-like protein 1B, putative, expressed
LOC_Os11g26910OsAffx.6724.2.S1_s_at1/1111+14959197..14962095SKP1-like protein 1B, putative, expressed
LOC_Os11g26920Os.52242.1.S1_at1/1111+14972543..14975984transposon protein, putative, Mariner sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20311.1.S1_at--459--1071Chr11:14953157..14953181 (25 bp)
AGGGTTGCACCATCATCCTAACATC
LOC_Os11g26900
Os.20311.1.S1_at--98--9931Chr11:14953095..14953119 (25 bp)
TACTGATCAACTGTGGCATCTTCCT
LOC_Os11g26900
Os.20311.1.S1_at--32--271Chr11:14953001..14953025 (25 bp)
ATATGCCCTTGTTGCATTCTTCTTC
LOC_Os11g26900
Os.20311.1.S1_at--84--9271Chr11:14952972..14952996 (25 bp)
TCCTCGGCTTGTGGTTTGTGCTGCT
LOC_Os11g26900
Os.20311.1.S1_at--412--6131Chr11:14952914..14952938 (25 bp)
GAGGGTCGCCGTTGCCATTGCGAAA
LOC_Os11g26900
Os.20311.1.S1_at--1141--5551Chr11:14952893..14952917 (25 bp)
GAAAGCGCTCAAGGGTTACCTGCTC
LOC_Os11g26900
Os.20311.1.S1_at--84--9451Chr11:14952870..14952894 (25 bp)
TCGGCGGCGGCAATTGATCAAATAT
LOC_Os11g26900
Os.20311.1.S1_at--1119--4871Chr11:14952820..14952844 (25 bp)
GCTTTGCTAGCTCACAGTAGTTTTC
LOC_Os11g26900
Os.20311.1.S1_at--201--6931Chr11:14952786..14952810 (25 bp)
GTATGTCGTGTCTATAGGCGTTGTA
LOC_Os11g26900
Os.20311.1.S1_at--439--8371Chr11:14952770..14952794 (25 bp)
GGCGTTGTAGCCCATAAACTCACTG
LOC_Os11g26900
Os.20311.1.S1_at--1000--3971Chr11:14952725..14952749 (25 bp)
CGTGTTCTTGTAAGGCCCTGTTTCT
LOC_Os11g26900
Target Sequence 
AGGGTTGCACCATCATCCTAACATCCCCGNTGCAAACCGCCAGNTCCCNTCCTNCCGCTAGACTACTGATCAACTGTGGC
ATCTTCCTCGTCGCCACTGCCGGGTCCTCCATAGTTTTCCNACACTGCTGGAGACCCTTCCGCCATCGACGGTCCTGCAT
ATGCCCTTGTTGCATTCTTCTTCGTCCTCCTCGGCTTGTGGTTTGTGCTGCTTGGACCCGTCGCCGGCCAGTTCCCTGGA
GCCACGAGGGTCGCCGTTGCCATTGCGAAAGCGCTCAAGGGTTACCTGCTCGGCGGCGGCAATTGATCAAATATTTGATT
CATTCTTTATATAGGTATAGCTTTGCTAGCTCACAGTAGTTTTCTGTTTGTTTGTATGTCGTGTCTATAGGCGTTGTAGC
CCATAAACTCACTGTAAAGTGTGAAGTGTATATACGTGTTCTTGTAAGGCCCTGTTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20311.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis