Browse Element(s) Details


Os.4638.1.S1_at

Description gb:AK121173.1
DB_XREF= gi:37990796
TID=Os.4638.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4638 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023081K07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023081K07, full insert sequence.
FL= gb:AK121173.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2688011/11Rapid ALkalinization Factor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g26850Os.8240.1.S1_at10/1111+14919682..14922705Adenosylhomocysteinase, putative, expressed
LOC_Os11g26860Os.10151.1.S1_at11/1111+14936469..14939774Serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed
LOC_Os11g26870NANA11+14943526..14943783hypothetical protein
LOC_Os11g26880Os.4638.1.S1_at11/1111+14944641..14945659Rapid ALkalinization Factor family protein, expressed
LOC_Os11g26880OsAffx.8287.1.S1_x_at2/1111+14944641..14945659Rapid ALkalinization Factor family protein, expressed
LOC_Os11g26890OsAffx.19033.1.S1_at11/1111+14946907..14949821expressed protein
LOC_Os11g26890Os.11041.1.S1_s_at11/1111+14946907..14949821expressed protein
LOC_Os11g26900Os.20311.1.S1_at11/1111+14952683..14954831expressed protein
LOC_Os11g26910Os.37924.1.S1_x_at11/1111+14959197..14962095SKP1-like protein 1B, putative, expressed
LOC_Os11g26910Os.46772.1.S1_at10/1111+14959197..14962095SKP1-like protein 1B, putative, expressed
LOC_Os11g26910OsAffx.6724.2.S1_s_at1/1111+14959197..14962095SKP1-like protein 1B, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007267biological_processcell-cell signaling
GO:0048046cellular_componentapoplast
GO:0004871molecular_functionsignal transducer activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4638.1.S1_at--256--131Chr11:14945331..14945355 (25 bp)
ATTCAGAGGCTCACAGCAGGATGCT
LOC_Os11g26880
Os.4638.1.S1_at--444--1511Chr11:14945293..14945317 (25 bp)
AGCAGCAACGGCAGGAGGTACATCA
LOC_Os11g26880
Os.4638.1.S1_at--697--4851Chr11:14945268..14945292 (25 bp)
GCTACGACGCCCTGAGGAGCGACGT
LOC_Os11g26880
Os.4638.1.S1_at--833--1051Chr11:14945226..14945250 (25 bp)
AGGGTGTCCCTTACTATAACTGCAG
LOC_Os11g26880
Os.4638.1.S1_at--227--4071Chr11:14945165..14945189 (25 bp)
CGAGACCATCACCAGGTGCAGGGAT
LOC_Os11g26880
Os.4638.1.S1_at--581--7971Chr11:14945138..14945162 (25 bp)
GGATCCGTGATTACTACTGCACTGC
LOC_Os11g26880
Os.4638.1.S1_at--606--1991Chr11:14945118..14945142 (25 bp)
ACTGCCTGCTTGTTTTGCTGGATGA
LOC_Os11g26880
Os.4638.1.S1_at--596--4711Chr11:14945102..14945126 (25 bp)
GCTGGATGATCTTGCCATGAGAGGA
LOC_Os11g26880
Os.4638.1.S1_at--418--6131Chr11:14945070..14945094 (25 bp)
GAGTGGCTACCTGAGATGCAAATCT
LOC_Os11g26880
Os.4638.1.S1_at--31--8791Chr11:14945027..14945051 (25 bp)
TGTTTTTCTTTTACCCTCTCTTCTG
LOC_Os11g26880
Os.4638.1.S1_at--846--751Chr11:14944911..14944935 (25 bp)
ATGTAAGATCTGGTTGCAAGCTATA
LOC_Os11g26880
Target Sequence 
ATTCAGAGGCTCACAGCAGGATGCTGTGGGAGTCCAGCAGCAGCAACGGCAGGAGGTACATCAGCTACGACGCCCTGAGG
AGCGACGTGGTGCCGTGCTCGAGGCAGGGTGTCCCTTACTATAACTGCAGGATCATGACCACCGCCAACCCTTACACCCG
GGGATGCGAGACCATCACCAGGTGCAGGGATGTGGATCCGTGATTACTACTGCACTGCCTGCTTGTTTTGCTGGATGATC
TTGCCATGAGAGGAATTGCAGGAGTGGCTACCTGAGATGCAAATCTTGGTTTTTATTTTTTTTTTGTTTTTCTTTTACCC
TCTCTTCTGTTCTTTCTTCTTCTTTATGTTCTGCATTTGCTGAATCATTGTAGGTGATTCATGGATGATTTACATGTTCA
AAGATCTTATGAGTATGTATATGTAAGATCTGGTTGCAAGCTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4638.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis