Browse Element(s) Details


OsAffx.19033.1.S1_at

Description tigr:9639.m02403
TID=OsAffx.19033.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2689011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g26850Os.8240.1.S1_at10/1111+14919682..14922705Adenosylhomocysteinase, putative, expressed
LOC_Os11g26860Os.10151.1.S1_at11/1111+14936469..14939774Serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed
LOC_Os11g26870NANA11+14943526..14943783hypothetical protein
LOC_Os11g26880Os.4638.1.S1_at11/1111+14944641..14945659Rapid ALkalinization Factor family protein, expressed
LOC_Os11g26880OsAffx.8287.1.S1_x_at2/1111+14944641..14945659Rapid ALkalinization Factor family protein, expressed
LOC_Os11g26890OsAffx.19033.1.S1_at11/1111+14946907..14949821expressed protein
LOC_Os11g26890Os.11041.1.S1_s_at11/1111+14946907..14949821expressed protein
LOC_Os11g26900Os.20311.1.S1_at11/1111+14952683..14954831expressed protein
LOC_Os11g26910Os.37924.1.S1_x_at11/1111+14959197..14962095SKP1-like protein 1B, putative, expressed
LOC_Os11g26910Os.46772.1.S1_at10/1111+14959197..14962095SKP1-like protein 1B, putative, expressed
LOC_Os11g26910OsAffx.6724.2.S1_s_at1/1111+14959197..14962095SKP1-like protein 1B, putative, expressed
LOC_Os11g26920Os.52242.1.S1_at1/1111+14972543..14975984transposon protein, putative, Mariner sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010224biological_processresponse to UV-B
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19033.1.S1_at--78--4911Chr11:14947007..14947031 (25 bp)
GCTTCTTATGCATGTAAATCTTCCT
LOC_Os11g26890
OsAffx.19033.1.S1_at--638--10431Chr11:14947002..14947026 (25 bp)
TTATGCATGTAAATCTTCCTGTCAA
LOC_Os11g26890
OsAffx.19033.1.S1_at--647--4991Chr11:14946998..14947022 (25 bp)
GCATGTAAATCTTCCTGTCAAAATT
LOC_Os11g26890
OsAffx.19033.1.S1_at--697--3131Chr11:14946977..14947001 (25 bp)
AATTTTGCTATTTCTAGCATCCCAG
LOC_Os11g26890
OsAffx.19033.1.S1_at--1152--10191Chr11:14946969..14946993 (25 bp)
TATTTCTAGCATCCCAGATTGCCAG
LOC_Os11g26890
OsAffx.19033.1.S1_at--217--9531Chr11:14946965..14946989 (25 bp)
TCTAGCATCCCAGATTGCCAGGGTG
LOC_Os11g26890
OsAffx.19033.1.S1_at--102--551Chr11:14946959..14946983 (25 bp)
ATCCCAGATTGCCAGGGTGCTGAAT
LOC_Os11g26890
OsAffx.19033.1.S1_at--639--71Chr11:14946952..14946976 (25 bp)
ATTGCCAGGGTGCTGAATGACTGCC
LOC_Os11g26890
OsAffx.19033.1.S1_at--1002--4411Chr11:14946949..14946973 (25 bp)
GCCAGGGTGCTGAATGACTGCCGTA
LOC_Os11g26890
OsAffx.19033.1.S1_at--1116--7691Chr11:14946945..14946969 (25 bp)
GGGTGCTGAATGACTGCCGTAATTT
LOC_Os11g26890
OsAffx.19033.1.S1_at--502--9111Chr11:14946942..14946966 (25 bp)
TGCTGAATGACTGCCGTAATTTGCT
LOC_Os11g26890
Target Sequence 
GCTTCTTATGCATGTAAATCTTCCTGTCAAAATTTTGCTATTTCTAGCATCCCAGATTGCCAGGGTGCTGAATGACTGCC
GTAATTTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19033.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis