Browse Element(s) Details


Os.10151.1.S1_at

Description gb:AK101450.1
DB_XREF= gi:32986659
TID=Os.10151.1
CNT=48
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10151 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-205-G03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033039N02, full insert sequence.
FL= gb:AK105983.1 gb:AK101450.1 gb:AK105624.1 gb:AK071541.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2686011/11Serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g26840NANA11+14918363..14919099hypothetical protein
LOC_Os11g26850Os.8240.1.S1_at10/1111+14919682..14922705Adenosylhomocysteinase, putative, expressed
LOC_Os11g26860Os.10151.1.S1_at11/1111+14936469..14939774Serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed
LOC_Os11g26870NANA11+14943526..14943783hypothetical protein
LOC_Os11g26880Os.4638.1.S1_at11/1111+14944641..14945659Rapid ALkalinization Factor family protein, expressed
LOC_Os11g26880OsAffx.8287.1.S1_x_at2/1111+14944641..14945659Rapid ALkalinization Factor family protein, expressed
LOC_Os11g26890OsAffx.19033.1.S1_at11/1111+14946907..14949821expressed protein
LOC_Os11g26890Os.11041.1.S1_s_at11/1111+14946907..14949821expressed protein
LOC_Os11g26900Os.20311.1.S1_at11/1111+14952683..14954831expressed protein
LOC_Os11g26910Os.37924.1.S1_x_at11/1111+14959197..14962095SKP1-like protein 1B, putative, expressed
LOC_Os11g26910Os.46772.1.S1_at10/1111+14959197..14962095SKP1-like protein 1B, putative, expressed
LOC_Os11g26910OsAffx.6724.2.S1_s_at1/1111+14959197..14962095SKP1-like protein 1B, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006544biological_processglycine metabolism
GO:0006563biological_processL-serine metabolism
GO:0006800biological_processoxygen and reactive oxygen species metabolism
GO:0009626biological_processhypersensitive response
GO:0019464biological_processglycine decarboxylation via glycine cleavage system
GO:0005739cellular_componentmitochondrion
GO:0005759cellular_componentmitochondrial matrix
GO:0005829cellular_componentcytosol
GO:0004372molecular_functionglycine hydroxymethyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10151.1.S1_at--414--8931Chr11:14939204..14939228 (25 bp)
TGACCATCTGCCTCAACATCCAGAA
LOC_Os11g26860
Os.10151.1.S1_at--1072--3791Chr11:14939256..14939280 (25 bp)
CTCCAAGGGCCTGGTGAACAACAAG
LOC_Os11g26860
Os.10151.1.S1_at--480--3911Chr11:14939299..14939323 (25 bp)
CTGGAGGTCGAGAAGTTCGCCACCT
LOC_Os11g26860
Os.10151.1.S1_at--344--10511Chr11:14939341..14939365 (25 bp)
TTCACCCTCGACAGCATGAAGTACA
LOC_Os11g26860
Os.10151.1.S1_at--164--2371Chr11:14939382..14939406 (25 bp)
AAACACACACAAACCATGGTCCTAC
LOC_Os11g26860
Os.10151.1.S1_at--132--9771Chr11:14939413..14939437 (25 bp)
TAATCGTCGACCAGCTGTGCTCTCG
LOC_Os11g26860
Os.10151.1.S1_at--799--2211Chr11:14939471..14939495 (25 bp)
ACAAGCTGGCCCTGTGTTACGGATT
LOC_Os11g26860
Os.10151.1.S1_at--261--10471Chr11:14939487..14939511 (25 bp)
TTACGGATTTTGTCTGCCCATCGAG
LOC_Os11g26860
Os.10151.1.S1_at--311--10091Chr11:14939516..14939540 (25 bp)
TAGGTTTCATAAAACGCTCTCTCCC
LOC_Os11g26860
Os.10151.1.S1_at--366--9091Chr11:14939550..14939574 (25 bp)
TGCTGCCTCTGGTTTGGTTGCCAAC
LOC_Os11g26860
Os.10151.1.S1_at--110--6891Chr11:14939653..14939677 (25 bp)
GTATTTGCCAATAATCAATCCGTTT
LOC_Os11g26860
Target Sequence 
TGACCATCTGCCTCAACATCCAGAAGGAGCACGGCAAGCTCCTCAAGGACTTCTCCAAGGGCCTGGTGAACAACAAGGAC
ATCGAGAACCTCAAGCTGGAGGTCGAGAAGTTCGCCACCTCCTTCGACATGCCCGGCTTCACCCTCGACAGCATGAAGTA
CAAGGAGTAGGAAAACAAAAACACACACAAACCATGGTCCTACCGCCGCTAATCGTCGACCAGCTGTGCTCTCGTGGACC
GCCGTCGTCGTCATCTTCTTCCTCGGCACAAGCTGGCCCTGTGTTACGGATTTTGTCTGCCCATCGAGATGATAGGTTTC
ATAAAACGCTCTCTCCCCCACCCTGCTGCTGCCTCTGGTTTGGTTGCCAACCTCATCCCCCATCGGTTTTTTTCCTCCTC
TTGTTTCTAATTTCTAGGAGCTGTGCCTTTTGGAATCATGGAATGTCAAGTATTTGCCAATAATCAATCCGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10151.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis