Browse Element(s) Details


OsAffx.31174.4.S1_x_at

Description tigr:9640.m02557
TID=OsAffx.31174.4
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2666011/11hypothetical protein
LOC_Os08g055009/11retrotransposon protein, putative, unclassified
LOC_Os12g274807/11hypothetical protein
LOC_Os04g017307/11hypothetical protein
LOC_Os09g397106/11retrotransposon protein, putative, unclassified
LOC_Os01g654705/11hypothetical protein
LOC_Os04g127305/11hypothetical protein
LOC_Os06g094395/11
LOC_Os02g387904/11expressed protein
LOC_Os03g486424/11hypothetical protein
LOC_Os02g250002/11hypothetical protein
LOC_Os02g057602/11hypothetical protein
LOC_Os03g174202/11transposon protein, putative, unclassified
LOC_Os03g435641/11hypothetical protein
LOC_Os01g217601/11hypothetical protein
LOC_Os11g064701/11retrotransposon protein, putative, unclassified
LOC_Os07g077501/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g26640OsAffx.29695.1.S1_s_at1/1112+15603163..15606730retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g26650Os.46012.2.S1_x_at9/1112+15608885..15611533retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g26650Os.27088.1.A1_x_at6/1112+15608885..15611533retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g26650Os.46012.3.S1_x_at5/1112+15608885..15611533retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g26650Os.54691.1.S1_x_at1/1112+15608885..15611533retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g26660OsAffx.31174.4.S1_x_at11/1112+15624434..15626162hypothetical protein
LOC_Os12g26660OsAffx.31174.5.S1_x_at8/1112+15624434..15626162hypothetical protein
LOC_Os12g26670OsAffx.19840.1.S1_at11/1112+15628902..15629362hypothetical protein
LOC_Os12g26680OsAffx.31895.1.S1_at11/1112+15634168..15635277hypothetical protein
LOC_Os12g26690Os.51010.1.S1_at11/1112+15636766..15637739expressed protein
LOC_Os12g26700NANA12+15643190..15644320retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g26710OsAffx.31813.1.S1_x_at2/1112+15645997..15652772retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g26710Os.51869.1.S1_at1/1112+15645997..15652772retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31174.4.S1_x_at--757--3616Chr12:15624767..15624791 (25 bp)
CTTGGTATTCCTATTCATTATCGGA
LOC_Os12g26660
OsAffx.31174.4.S1_x_at--471--9433Chr12:15624787..15624811 (25 bp)
TCGGAAACTCCGGAATGTTGATTGG
LOC_Os12g26660
OsAffx.31174.4.S1_x_at--38--3611Chr12:15625365..15625389 (25 bp)
CATTGTATAATGTGCCTCGAAAGAA
LOC_Os12g26660
OsAffx.31174.4.S1_x_at--1005--1518Chr12:15625389..15625413 (25 bp)
AGCAGTCTACTGTGGCAGAGGTCAT
LOC_Os12g26660
OsAffx.31174.4.S1_x_at--452--515Chr12:15625451..15625475 (25 bp)
ATTGTTGGCCAAAAGCTAATCGAGT
LOC_Os12g26660
OsAffx.31174.4.S1_x_at--858--54516Chr12:15625477..15625501 (25 bp)
GAACGATTTGATCCTCAGGCTAGCT
LOC_Os12g26660
OsAffx.31174.4.S1_x_at--518--83123Chr12:15625494..15625518 (25 bp)
GGCTAGCTAATATAACTCTGTCAAA
LOC_Os12g26660
OsAffx.31174.4.S1_x_at--1003--57117Chr12:15625526..15625550 (25 bp)
GACTGCTTTGTATGGTCGCTCCATA
LOC_Os12g26660
OsAffx.31174.4.S1_x_at--1117--77921Chr12:15625539..15625563 (25 bp)
GGTCGCTCCATAAGAATGGTCAATT
LOC_Os12g26660
OsAffx.31174.4.S1_x_at--177--14327Chr12:15626004..15626023 (20 bp)
AGAAAGTTATCTTCATGTCTTCCTA
LOC_Os12g26660
OsAffx.31174.4.S1_x_at--661--8119Chr12:15626080..15626104 (25 bp)
ATGGTGCTACACTCTTGGAATCGGT
LOC_Os12g26660
Target Sequence 
CTTGGTATTCCTATTCATTATCGGAAACTCCGGAATGTTGATTGGAAAGGAGTTGAAGATAGATTTGAGAGGAAACTCAG
CACATGGAAAGGCAAAACACATGTCATATGATCAATACCCTACATTGTATAATGTGCCTCGAAAGAAGCAGTCTACTGTG
GCAGAGGTCATGAGCACAACGCNGCTAAATATCTCTTTTAGAAGAGCTATTGTTGGCCAAAAGCTAATCGAGTGGAACGA
TTTGATCCTCAGGCTAGCTAATATAACTCTGTCAAATGAAAAGGACTGCTTTGTATGGTCGCTCCATAAGAATGGTCAAT
TTTCNGTCAAATCTATNTATGCCGCGATCATGAACTGTAATGTTCGGATNAAAAAGAGAATTCTGTGGGACTTGAAAATT
CCACTAAAGATCAAGGTCTTTATGTGGTTTCTTCACAAGAAAGTTATCTTCATGTCTTCCTACTGGCTCCACTTCTGGTC
TACAATGCTACCACAGGANGAGCAGGATACTATNCGCAATGGTGCTACACTCTTGGAATCGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31174.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis