Browse Element(s) Details


OsAffx.31183.1.S1_at

Description tigr:9639.m02566
TID=OsAffx.31183.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2843010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g28400NANA11+15842208..15847228retrotransposon protein, putative, unclassified
LOC_Os11g28410Os.7544.1.S1_at9/1111+15847738..15858186retrotransposon protein, putative, unclassified
LOC_Os11g28410Os.5217.1.S1_at1/1111+15847738..15858186retrotransposon protein, putative, unclassified
LOC_Os11g28420Os.52253.1.S1_at11/1111+15864770..15865563expressed protein
LOC_Os11g28420OsAffx.8000.1.S1_x_at1/1111+15864770..15865563expressed protein
LOC_Os11g28430OsAffx.31183.1.S1_at10/1111+15867195..15869881hypothetical protein
LOC_Os11g28430OsAffx.18697.2.A1_at7/1111+15867195..15869881hypothetical protein
LOC_Os11g28440OsAffx.19052.1.S1_at10/1111+15873308..15874748hypothetical protein
LOC_Os11g28450OsAffx.19053.1.S1_at11/1111+15876188..15876945hypothetical protein
LOC_Os11g28460OsAffx.8934.1.S1_x_at1/1111+15877993..15878668hypothetical protein
LOC_Os11g28470OsAffx.19055.1.S1_at11/1111+15883922..15885418hypothetical protein
LOC_Os11g28480OsAffx.31184.1.S1_at10/1111+15886678..15893723expressed protein
LOC_Os11g28480Os.3448.1.S1_a_at1/1111+15886678..15893723expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31183.1.S1_at--1027--2034Chr11:15868171..15868195 (25 bp)
ACTTTTGGGAGTGGCATTCGAGCGA
LOC_Os11g28430
OsAffx.31183.1.S1_at--1022--6114Chr11:15868179..15868203 (25 bp)
GAGTGGCATTCGAGCGAAACCCCGT
LOC_Os11g28430
OsAffx.31183.1.S1_at--255--4914Chr11:15868184..15868208 (25 bp)
GCATTCGAGCGAAACCCCGTTTTGA
LOC_Os11g28430
OsAffx.31183.1.S1_at--760--1798Chr11:15868197..15868221 (25 bp)
ACCCCGTTTTGACAATGGCAAAATG
LOC_Os11g28430
OsAffx.31183.1.S1_at--932--6431Chr11:15869271..15869292 (22 bp)
GATCAGTAGTTGTTTTACTGCTCAG
LOC_Os11g28430
OsAffx.31183.1.S1_at--835--9911Chr11:15869283..15869307 (25 bp)
TACTGCTCAGATTTGCTTTGCTTTG
LOC_Os11g28430
OsAffx.31183.1.S1_at--909--3671Chr11:15869303..15869327 (25 bp)
CTTTGCTCTCTATGCAGGTGCGCAG
LOC_Os11g28430
OsAffx.31183.1.S1_at--853--4811Chr11:15869307..15869331 (25 bp)
GCTCTCTATGCAGGTGCGCAGGATA
LOC_Os11g28430
OsAffx.31183.1.S1_at--488--9871NONE
TACAGTGTCCCTAATTGGCTTCATA
NONE
OsAffx.31183.1.S1_at--482--4171Chr11:15869799..15869823 (25 bp)
CCCTAATTGGCTTCATAGCGATACC
LOC_Os11g28430
OsAffx.31183.1.S1_at--594--8291Chr11:15869807..15869831 (25 bp)
GGCTTCATAGCGATACCAATTAGAA
LOC_Os11g28430
Target Sequence 
ACTTTTGGGAGTGGCATTCGAGCGAAACCCCGTTTTGACAATGGCAAAATGTCAATTTTCTCGGACGGGGAGGCCCTACT
CGGCGAGGTTAGTCGTTATTGGAACCTTCGCGGAGACGGTGAATCCTGGTCCGGTGTCTGGTTTGCCCCGGATTCGGGAG
GAGTTTCCGTCGAGGTCGAGGGATTTCTGGGGCACAACCAATATCTCCCGTCTCCAAGGAGCTCAACACCCACGCGCAAG
AAGCATCAATGACCAGCTCTGGACCTTGATGATTGCACTAGGCTTCAATGCAGTAGTGAGCGTGAGGGTGTCAAACGAGA
TCAGTAGTTGTTTTACTGCTCAGATTTGCTTTGCTTTGCTCTCTATGCAGGTGCGCAGGATAGATGTTGGTCCGGGATAT
CAATGTTCCTCTTCCATTGCTACAGTGTCCCTAATTGGCTTCATAGCGATACCAATTAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31183.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis