Browse Element(s) Details


OsAffx.31186.1.S1_at

Description tigr:9639.m02574
TID=OsAffx.31186.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to kaurene synthase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2849011/11Ent-kaurene synthase B, chloroplast precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g28470OsAffx.19055.1.S1_at11/1111+15883922..15885418hypothetical protein
LOC_Os11g28480OsAffx.31184.1.S1_at10/1111+15886678..15893723expressed protein
LOC_Os11g28480Os.3448.1.S1_a_at1/1111+15886678..15893723expressed protein
LOC_Os11g28490OsAffx.31186.1.S1_at11/1111+15906020..15907595Ent-kaurene synthase B, chloroplast precursor, putative
LOC_Os11g28500OsAffx.7236.1.S1_at11/1111+15908651..15910852Terpene synthase, N-terminal domain containing protein
LOC_Os11g28510OsAffx.31187.1.S1_at11/1111+15916227..15916718hypothetical protein
LOC_Os11g28520OsAffx.19056.1.S1_at11/1111+15922706..15923347hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009686biological_processgibberellic acid biosynthesis
GO:0009740biological_processgibberellic acid mediated signaling
GO:0009507cellular_componentchloroplast
GO:0009536cellular_componentplastid
GO:0009899molecular_functionent-kaurene synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31186.1.S1_at--675--3311Chr11:15907205..15907229 (25 bp)
CACAGTGAGATTGGGTTCTGCTCGA
LOC_Os11g28490
OsAffx.31186.1.S1_at--944--6751Chr11:15907164..15907188 (25 bp)
GTTCAATGCTCTATACCAGACGAAT
LOC_Os11g28490
OsAffx.31186.1.S1_at--1041--10031Chr11:15907140..15907164 (25 bp)
TAGTCGTATTTGTGCAAAGGCCGCA
LOC_Os11g28490
OsAffx.31186.1.S1_at--680--2951Chr11:15907124..15907148 (25 bp)
AAGGCCGCACTGGTACAGAATCGCA
LOC_Os11g28490
OsAffx.31186.1.S1_at--389--7031Chr11:15907112..15907136 (25 bp)
GTACAGAATCGCATTGTCATGGATC
LOC_Os11g28490
OsAffx.31186.1.S1_at--581--8651Chr11:15906484..15906508 (25 bp)
TGGGCGAGCAGCAAGCACATCCCGG
LOC_Os11g28490
OsAffx.31186.1.S1_at--952--6171Chr11:15906451..15906475 (25 bp)
GAGGAGTACATGTCGGCCGCCAGCC
LOC_Os11g28490
OsAffx.31186.1.S1_at--55--6731Chr11:15906104..15906128 (25 bp)
GTTCTGGCAGACGAGTAATGTGGCA
LOC_Os11g28490
OsAffx.31186.1.S1_at--725--2831Chr11:15906080..15906104 (25 bp)
AAGTGCCTTCTACCGGGACGGCGAT
LOC_Os11g28490
OsAffx.31186.1.S1_at--583--7631Chr11:15906066..15906090 (25 bp)
GGGACGGCGATGGTTACTCGCCTAA
LOC_Os11g28490
OsAffx.31186.1.S1_at--995--1991Chr11:15906051..15906075 (25 bp)
ACTCGCCTAAGGAGATGCTCAGCGT
LOC_Os11g28490
Target Sequence 
CACAGTGAGATTGGGTTCTGCTCGAAGAACGTTGAGATTCTGTTCAATGCTCTATACCAGACGAATAGTCGTATTTGTGC
AAAGGCCGCACTGGTACAGAATCGCATTGTCATGGATCATATTGCCGAGCATTGGCGGCTGATGGTGAGGGCCATGATGA
CAGAGGCAGAGTGGGCGAGCAGCAAGCACATCCCGGCAACGATGGAGGAGTACATGTCGGCCGCCAGCCACTCCCTGGTG
GGCGCCATCTTCCAATCGGCGGCGTACCTGCTGGGCTCGAGGCTGCCGGAGGAGGTCGTCGGCGGCGAGGAAGGGAGGTC
AGCGTCACGTCGCGTGCTCTTGCCCTCGGCGGCGGCGTCGCCGGCGTCCGTGGAGGCGGCCAAGGTGGAGATCGGGAGGG
CCATCCGGGCGTTGAGGGGGGAGCTGCAGAGGCTGGTGTTCGGAGACGGCGCCGGGGTTGTTCCCCGGTCGTGCAGGGAG
ATGTTCTGGCAGACGAGTAATGTGGCAAGTGCCTTCTACCGGGACGGCGATGGTTACTCGCCTAAGGAGATGCTCAGCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31186.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis