Browse Element(s) Details


OsAffx.31195.1.S1_s_at

Description tigr:9639.m02624
TID=OsAffx.31195.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2905011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g29014OsAffx.19061.1.S1_at11/1111+16290272..16295159retrotransposon protein, putative, unclassified
LOC_Os11g29030OsAffx.7242.1.S1_s_at11/1111+16306262..16307525disease resistance protein RPM1 homolog, putative
LOC_Os11g29050OsAffx.31195.1.S1_s_at11/1111+16319877..16324837NB-ARC domain containing protein, expressed
LOC_Os11g29050OsAffx.31195.1.S1_at10/1111+16319877..16324837NB-ARC domain containing protein, expressed
LOC_Os11g29050Os.51873.1.S1_at7/1111+16319877..16324837NB-ARC domain containing protein, expressed
LOC_Os11g29060OsAffx.31196.1.S1_at9/1111+16334686..16337087hypothetical protein
LOC_Os11g29074OsAffx.19542.3.S1_x_at4/1111+16341468..16345666retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g29090OsAffx.31197.1.S1_at11/1111+16347342..16350526NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31195.1.S1_s_at--677--4351Chr11:16324081..16324105 (25 bp)
CCAGCTGTACGGCATGTTCATCAAG
LOC_Os11g29050
OsAffx.31195.1.S1_s_at--766--6731Chr11:16324096..16324120 (25 bp)
GTTCATCAAGGTGCCCAGGTGGATT
LOC_Os11g29050
OsAffx.31195.1.S1_s_at--529--7931Chr11:16324116..16324140 (25 bp)
GGATTGCTCATCTCACTGAACTGAA
LOC_Os11g29050
OsAffx.31195.1.S1_s_at--41--2511Chr11:16324141..16324165 (25 bp)
GAACTTAACCCTGTCAGTTACGGTG
LOC_Os11g29050
OsAffx.31195.1.S1_s_at--565--1211Chr11:16324156..16324180 (25 bp)
AGTTACGGTGCTCCGAACTGATACC
LOC_Os11g29050
OsAffx.31195.1.S1_s_at--1034--10831Chr11:16324181..16324205 (25 bp)
TTGGAGCTCCTTCAGAAGCTACCTC
LOC_Os11g29050
OsAffx.31195.1.S1_s_at--75--2711Chr11:16324196..16324220 (25 bp)
AAGCTACCTCGTATGTTCTGCCTTA
LOC_Os11g29050
OsAffx.31195.1.S1_s_at--605--9491Chr11:16324212..16324236 (25 bp)
TCTGCCTTATATTTTCGTCCTGGAC
LOC_Os11g29050
OsAffx.31195.1.S1_s_at--734--3911Chr11:16324231..16324255 (25 bp)
CTGGACATCCAGCAAGGACCTTGAT
LOC_Os11g29050
OsAffx.31195.1.S1_s_at--543--1532Chr11:16324311..16324335 (25 bp)
AGCATGGAGGGTTCGACTGCCTTAA
LOC_Os11g29050
OsAffx.31195.1.S1_s_at--725--811Chr11:16324782..16324806 (25 bp)
ATGGTGGTGAATCTGTCATCCTGCC
LOC_Os11g29050
Target Sequence 
CCAGCTGTACGGCATGTTCATCAAGGTGCCCAGGTGGATTGCTCATCTCACTGAACTGAAGAACTTAACCCTGTCAGTTA
CGGTGCTCCGAACTGATACCTTGGAGCTCCTTCAGAAGCTACCTCGTATGTTCTGCCTTATATTTTCGTCCTGGACATCC
AGCAAGGACCTTGATTTGGTGGACATTCTTGAAAAGAACAAGTCGGACTCAGAGGGGCAGATCTTGGTCAAGCATGGAGG
GTTCGACTGCCTTAAGCTGCTCCGCTTGGACGCGCCGCTCCTGCCATTGCTCGTCTTCTCGGAGAGGGCCATGGGCAACC
TCGAAAGGCTTGATATGAAGTTCAACACGCTGGAAGGCGTCTTCGGCATGGATAACCTCGCGAGCCTTCGTGAGGTGCAC
ATGACGGCCGGTGAAAAAGCCGGTGAGATCACCAAGTCAATAGTGCGTGAGCTGGAGGCCGAGGCAGCTTTTGTAGTGAC
TGGTGCTTGTTTGAGTTTACCCAATAAGAATGGTTTTCCTATTTGGGGATGGTGCCATGGTGGTGAATCTGTCATCCTGC
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31195.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis