Browse Element(s) Details


OsAffx.31222.2.S1_at

Description tigr:9639.m02739
TID=OsAffx.31222.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3028011/11hypothetical protein
LOC_Os12g277708/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g337503/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g30220OsAffx.31221.1.S1_at10/1111+17068717..17069770hypothetical protein
LOC_Os11g30230OsAffx.19082.1.S1_at10/1111+17072662..17073647hypothetical protein
LOC_Os11g30240OsAffx.19083.1.S1_at11/1111+17076205..17079543hypothetical protein
LOC_Os11g30250NANA11+17083108..17083314hypothetical protein
LOC_Os11g30260OsAffx.92.1.S1_at8/1111+17086043..17086818transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g30270NANA11+17087755..17090316transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g30280OsAffx.31222.2.S1_x_at11/1111+17091458..17092031hypothetical protein
LOC_Os11g30280OsAffx.31222.2.S1_at11/1111+17091458..17092031hypothetical protein
LOC_Os11g30290OsAffx.31223.1.S1_at11/1111+17093777..17094166PHF5-like protein
LOC_Os11g30300OsAffx.19084.1.S1_at4/1111+17096207..17096593hypothetical protein
LOC_Os11g30310OsAffx.11451.4.S1_x_at1/1111+17097206..17098828Reticuline oxidase precursor, putative
LOC_Os11g30320OsAffx.31224.1.S1_at7/1111+17101382..17102759hypothetical protein
LOC_Os11g30320OsAffx.13325.1.S1_at1/1111+17101382..17102759hypothetical protein
LOC_Os11g30330OsAffx.31225.1.S1_at11/1111+17106929..17108855hypothetical protein
LOC_Os11g30340OsAffx.31226.1.S1_at11/1111+17112092..17112614hypothetical protein
LOC_Os11g30350Os.54912.1.S1_at11/1111+17113874..17115312CBS domain-containing protein, putative, expressed
LOC_Os11g30350Os.54912.1.S1_s_at11/1111+17113874..17115312CBS domain-containing protein, putative, expressed
LOC_Os11g30350OsAffx.31227.1.S1_at8/1111+17113874..17115312CBS domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31222.2.S1_at--701--10532Chr12:16368492..16368516 (25 bp)
TTCAGATCAGGCTGTCAGCGCTGCT
LOC_Os12g27770
OsAffx.31222.2.S1_at--713--411Chr11:17091961..17091985 (25 bp)
ATCAGGCTGTCAGCGCTGCTACCTT
LOC_Os11g30280
OsAffx.31222.2.S1_at--1025--3871Chr11:17091955..17091979 (25 bp)
CTGTCAGCGCTGCTACCTTGCCGAG
LOC_Os11g30280
OsAffx.31222.2.S1_at--86--3713Chr03:23717896..23717920 (25 bp)
CTACCTTGCCGAGATGTAGAACAAG
NONE
OsAffx.31222.2.S1_at--975--10694Chr12:16368520..16368544 (25 bp)
TTGCCGAGATGTAGAACAAGGTCCT
LOC_Os12g27770
OsAffx.31222.2.S1_at--799--6954Chr12:16368530..16368554 (25 bp)
GTAGAACAAGGTCCTCAGGTTCCCA
LOC_Os12g27770
OsAffx.31222.2.S1_at--16--6712Chr12:16368548..16368572 (25 bp)
GTTCCCAACAACCTGATAATTCTTC
LOC_Os12g27770
OsAffx.31222.2.S1_at--829--4272Chr12:16368559..16368583 (25 bp)
CCTGATAATTCTTCTAATTTGGATG
LOC_Os12g27770
OsAffx.31222.2.S1_at--949--3112Chr12:16368574..16368598 (25 bp)
AATTTGGATGAGATATTGGCTGGCG
LOC_Os12g27770
OsAffx.31222.2.S1_at--386--692Chr12:16368581..16368605 (25 bp)
ATGAGATATTGGCTGGCGAAGAAAC
LOC_Os12g27770
OsAffx.31222.2.S1_at--188--32Chr12:16368588..16368612 (25 bp)
ATTGGCTGGCGAAGAAACAGATGAG
LOC_Os12g27770
Target Sequence 
TTCAGATCAGGCTGTCAGCGCTGCTACCTTGCCGAGATGTAGAACAAGGTCCTCAGGTTCCCAACAACCTGATAATTCTT
CTAATTTGGATGAGATATTGGCTGGCGAAGAAACAGATGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31222.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis