Browse Element(s) Details


OsAffx.31223.1.S1_at

Description tigr:9639.m02740
TID=OsAffx.31223.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Uncharacterised protein family (UPF0123)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3029011/11PHF5-like protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g30220OsAffx.31221.1.S1_at10/1111+17068717..17069770hypothetical protein
LOC_Os11g30230OsAffx.19082.1.S1_at10/1111+17072662..17073647hypothetical protein
LOC_Os11g30240OsAffx.19083.1.S1_at11/1111+17076205..17079543hypothetical protein
LOC_Os11g30250NANA11+17083108..17083314hypothetical protein
LOC_Os11g30260OsAffx.92.1.S1_at8/1111+17086043..17086818transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g30270NANA11+17087755..17090316transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g30280OsAffx.31222.2.S1_x_at11/1111+17091458..17092031hypothetical protein
LOC_Os11g30280OsAffx.31222.2.S1_at11/1111+17091458..17092031hypothetical protein
LOC_Os11g30290OsAffx.31223.1.S1_at11/1111+17093777..17094166PHF5-like protein
LOC_Os11g30300OsAffx.19084.1.S1_at4/1111+17096207..17096593hypothetical protein
LOC_Os11g30310OsAffx.11451.4.S1_x_at1/1111+17097206..17098828Reticuline oxidase precursor, putative
LOC_Os11g30320OsAffx.31224.1.S1_at7/1111+17101382..17102759hypothetical protein
LOC_Os11g30320OsAffx.13325.1.S1_at1/1111+17101382..17102759hypothetical protein
LOC_Os11g30330OsAffx.31225.1.S1_at11/1111+17106929..17108855hypothetical protein
LOC_Os11g30340OsAffx.31226.1.S1_at11/1111+17112092..17112614hypothetical protein
LOC_Os11g30350Os.54912.1.S1_at11/1111+17113874..17115312CBS domain-containing protein, putative, expressed
LOC_Os11g30350Os.54912.1.S1_s_at11/1111+17113874..17115312CBS domain-containing protein, putative, expressed
LOC_Os11g30350OsAffx.31227.1.S1_at8/1111+17113874..17115312CBS domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31223.1.S1_at--1074--7231Chr11:17094052..17094076 (25 bp)
GTCGCCTGCGACTCCATGGTGCGGC
LOC_Os11g30290
OsAffx.31223.1.S1_at--922--4791Chr11:17093973..17093997 (25 bp)
GCTCCCGCAGCGAGAGGTGCCTGGT
LOC_Os11g30290
OsAffx.31223.1.S1_at--895--1331Chr11:17093961..17093985 (25 bp)
AGAGGTGCCTGGTGTGCGGCGCCGG
LOC_Os11g30290
OsAffx.31223.1.S1_at--46--8491Chr11:17093910..17093934 (25 bp)
TGGCGGATGCGTACTACTGCAGGTC
LOC_Os11g30290
OsAffx.31223.1.S1_at--189--4691Chr11:17093908..17093932 (25 bp)
GCGGATGCGTACTACTGCAGGTCGT
LOC_Os11g30290
OsAffx.31223.1.S1_at--192--571Chr11:17093904..17093928 (25 bp)
ATGCGTACTACTGCAGGTCGTGCGT
LOC_Os11g30290
OsAffx.31223.1.S1_at--297--4651Chr11:17093902..17093926 (25 bp)
GCGTACTACTGCAGGTCGTGCGTGC
LOC_Os11g30290
OsAffx.31223.1.S1_at--1046--9891Chr11:17093899..17093923 (25 bp)
TACTACTGCAGGTCGTGCGTGCAGA
LOC_Os11g30290
OsAffx.31223.1.S1_at--340--3731Chr11:17093897..17093921 (25 bp)
CTACTGCAGGTCGTGCGTGCAGATG
LOC_Os11g30290
OsAffx.31223.1.S1_at--944--5011Chr11:17093892..17093916 (25 bp)
GCAGGTCGTGCGTGCAGATGGAGAA
LOC_Os11g30290
OsAffx.31223.1.S1_at--383--831Chr11:17093875..17093899 (25 bp)
ATGGAGAAGGATCGCGACGGCTGCC
LOC_Os11g30290
Target Sequence 
GTCGCCTGCGACTCCATGGTGCGGCCCGCCGCGCCGGCCCGCGTCTGCGACGGCTGCAGCGGCGGCGGCGGCGGGCACGG
CTCCCGCAGCGAGAGGTGCCTGGTGTGCGGCGCCGGCGCCGGAGAAGGAGGTGCGGCGGCGGTGGCGGATGCGTACTACT
GCAGGTCGTGCGTGCAGATGGAGAAGGATCGCGACGGCTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31223.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis