Browse Element(s) Details


OsAffx.31228.1.S1_at

Description tigr:9639.m02749
TID=OsAffx.31228.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g304008/11hypothetical protein
LOC_Os06g092502/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g30380NANA11+17137848..17138267SBP domain containing protein
LOC_Os11g30390OsAffx.29313.1.S1_at1/1111+17155172..17162200transposon protein, putative, Mutator sub-class
LOC_Os11g30400OsAffx.31228.1.S1_at8/1111+17162644..17166856hypothetical protein
LOC_Os11g30400Os.10046.1.S1_at1/1111+17162644..17166856hypothetical protein
LOC_Os11g30410Os.40201.1.S1_at11/1111+17167767..17173977ubiquitin activating enzyme, putative, expressed
LOC_Os11g30419OsAffx.13875.1.S1_at1/1111+17183216..17184904NA

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31228.1.S1_at--874--9472Chr11:17163730..17163754 (25 bp)
TCTCCAAGTTTGTGGCGAATTTGAT
LOC_Os11g30400
OsAffx.31228.1.S1_at--10--5232Chr11:17165363..17165387 (25 bp)
GAATTTGATAGGTTTCTTCCGCAGG
LOC_Os11g30400
OsAffx.31228.1.S1_at--273--10772Chr11:17165367..17165388 (22 bp)
TTGATAGGTTTCTTCCGCAGGTTTT
LOC_Os11g30400
OsAffx.31228.1.S1_at--721--7131Chr11:17163828..17163852 (25 bp)
GTCATTTTTTATGGTTCATTTGGCA
LOC_Os11g30400
OsAffx.31228.1.S1_at--996--651NONE
ATGCAATGCAGGTTTCTTCCGCAGG
NONE
OsAffx.31228.1.S1_at--495--651NONE
ATGCAGGTTTCTTCCGCAGGTTTTT
NONE
OsAffx.31228.1.S1_at--284--3191NONE
CAATGCAGGTCAAAAGAGGGCGGAA
NONE
OsAffx.31228.1.S1_at--365--32Chr11:17166606..17166630 (25 bp)
ATTGGTTGGTTCTTAATGGCTTCCT
LOC_Os11g30400
OsAffx.31228.1.S1_at--739--7853Chr11:17166613..17166637 (25 bp)
GGTTCTTAATGGCTTCCTCAAGCGG
LOC_Os11g30400
OsAffx.31228.1.S1_at--434--3391Chr11:17166686..17166710 (25 bp)
CAGCGGTGGTTGGTGCGGCAGTTGC
LOC_Os11g30400
OsAffx.31228.1.S1_at--783--871Chr11:17166735..17166759 (25 bp)
ATGGCCTCACCGCACAGGTGGCGCA
LOC_Os11g30400
Target Sequence 
TCTCCAAGTTTGTGGCGAATTTGATAGGTTTCTTCCGCAGGTTTTTGTTTCGTCATTTTTTATGGTTCATTTGGCAAAAG
TTTTGGTCAGAAAGTTGATAGAAAGAAAAAGAATTGCCATGCAATGCAGGTTTCTTCCGCAGGTTTTTGTTGTTCATTAT
TTGGCAAAAAGTTTTTGCTCAAAAAGTTTGACAGAAAGAAAAAGAATTGCCATGCAATGCAGGTCAAAAGAGGGCGGAAG
GTGGGCGGCGGCGGGCACAGCTAGGTGCCATGTGGCGGCGCGCGCGGCTGGGTGCCGAGTGTCTGGCGGTGACGCCGTGC
CCGTCCACCTCCCCGTCGATTGGTTGGTTCTTAATGGCTTCCTCAAGCGGGAGAGGGGGGAGCACGGTGTCGGCAGCGGC
GGGGGGAGGGGGCGTCGTCAGCGGTGGTTGGTGCGGCAGTTGCGGATGCGGAAGCAGCGCCACCTCGATGGCCTCACCGC
ACAGGTGGCGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31228.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis