Browse Element(s) Details


OsAffx.31233.2.S1_s_at

Description tigr:9639.m02800
TID=OsAffx.31233.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g487109/11expressed protein
LOC_Os11g309309/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48680Os.54463.1.S1_at11/115+27812777..27813377expressed protein
LOC_Os05g48690Os.35356.1.S1_at11/115+27815785..27819208expressed protein
LOC_Os05g48700Os.51835.1.S1_a_at11/115+27827531..27829652oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os05g48710OsAffx.31233.1.S1_at11/115+27837449..27840474expressed protein
LOC_Os05g48710OsAffx.31233.2.S1_s_at9/115+27837449..27840474expressed protein
LOC_Os05g48710OsAffx.31233.2.S1_at1/115+27837449..27840474expressed protein
LOC_Os05g48720OsAffx.1319.1.S1_at1/115+27840877..27843589transposon protein, putative, Mariner sub-class
LOC_Os05g48730OsAffx.15155.1.S1_at11/115+27845754..27846005hypothetical protein
LOC_Os05g48740NANA5+27852177..27852404expressed protein
LOC_Os05g48750OsAffx.4655.1.S1_x_at11/115+27852857..278560713-deoxy-D-manno-octulosonate cytidylyltransferase family protein, expressed
LOC_Os05g48750Os.7761.1.S1_at10/115+27852857..278560713-deoxy-D-manno-octulosonate cytidylyltransferase family protein, expressed
LOC_Os05g48760NANA5+27860752..27864700expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007623biological_processcircadian rhythm
GO:0009409biological_processresponse to cold
GO:0005634cellular_componentnucleus
GO:0003676molecular_functionnucleic acid binding
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31233.2.S1_s_at--44--3912Chr05:27838848..27838872 (25 bp)
CGAGGCAAGTGGTTTGAACGTAAAT
LOC_Os05g48710
OsAffx.31233.2.S1_s_at--471--8572Chr05:27838857..27838881 (25 bp)
TGGTTTGAACGTAAATCCGGCTACT
LOC_Os05g48710
OsAffx.31233.2.S1_s_at--756--10492Chr05:27838861..27838885 (25 bp)
TTGAACGTAAATCCGGCTACTTATT
LOC_Os05g48710
OsAffx.31233.2.S1_s_at--653--9952Chr05:27838913..27838937 (25 bp)
TAGCCAGGATGGGCCTGATTTGGAT
LOC_Os05g48710
OsAffx.31233.2.S1_s_at--112--2232Chr05:27839067..27839091 (25 bp)
ACAATGGCCAACCAAGGTGGTGGAC
LOC_Os05g48710
OsAffx.31233.2.S1_s_at--547--872Chr05:27839070..27839094 (25 bp)
ATGGCCAACCAAGGTGGTGGACCGA
LOC_Os05g48710
OsAffx.31233.2.S1_s_at--979--4372Chr05:27839074..27839098 (25 bp)
CCAACCAAGGTGGTGGACCGAGCAA
LOC_Os05g48710
OsAffx.31233.2.S1_s_at--28--1712Chr05:27839077..27839101 (25 bp)
ACCAAGGTGGTGGACCGAGCAAGCA
LOC_Os05g48710
OsAffx.31233.2.S1_s_at--223--8632Chr05:27839084..27839108 (25 bp)
TGGTGGACCGAGCAAGCACATCATG
LOC_Os05g48710
OsAffx.31233.2.S1_s_at--1030--3971NONE
CGGGCAGAGCAAGGACGTGTCTAAC
NONE
OsAffx.31233.2.S1_s_at--613--5031NONE
GCAGAGCAAGGACGTGTCTAACCCA
NONE
Target Sequence 
CGAGGCAAGTGGTTTGAACGTAAATCCGGCTACTTATTGGAAGAAGGCAAAAATATGATCTTCGATAGCCAGGATGGGCC
TGATTTGGATGAGTACGAGTTCTGGCCTGATTTGGATGATGAAGGCGGCGACTTGTACTTGATTGGTTCGATGGGAGGTG
ACTTGTGGCAGGGGACAATGGCCAACCAAGGTGGTGGACCGAGCAAGCACATCATGGTGGAGTCCTCCAATATCAACGGG
CAGAGCAAGGACGTGTCTAACCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31233.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis