Browse Element(s) Details


OsAffx.31286.1.S1_at

Description tigr:9639.m03048
TID=OsAffx.31286.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3395010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g33466NANA11+19311928..19313145retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g33934NANA11+19319753..19320554hypothetical protein
LOC_Os11g33938NANA11+19321549..19325662hypothetical protein
LOC_Os11g33942NANA11+19329179..19330024hypothetical protein
LOC_Os11g33946NANA11+19331287..19333706hypothetical protein
LOC_Os11g33950OsAffx.31286.1.S1_at10/1111+19335685..19336289hypothetical protein
LOC_Os11g33960OsAffx.2735.1.S1_at9/1111+19338980..19345603transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g33970OsAffx.7288.1.S1_at11/1111+19357334..19358206expressed protein
LOC_Os11g33980OsAffx.31287.1.S1_at11/1111+19358315..19362454hypothetical protein
LOC_Os11g33980OsAffx.20497.1.S1_at1/1111+19358315..19362454hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31286.1.S1_at--728--6231Chr11:19335564..19335585 (22 bp)
GATGGCAGATGGAGCAAGTCTTATT
NONE
OsAffx.31286.1.S1_at--1084--6391Chr11:19336047..19336071 (25 bp)
GATCTGATCAATAAGACCTTGGCTA
LOC_Os11g33950
OsAffx.31286.1.S1_at--770--3591Chr11:19336064..19336088 (25 bp)
CTTGGCTAAAGGTGCAGTTCTAAAA
LOC_Os11g33950
OsAffx.31286.1.S1_at--64--2691Chr11:19336090..19336114 (25 bp)
AAGACTCTAGTATAATCGACGTGCT
LOC_Os11g33950
OsAffx.31286.1.S1_at--398--7311Chr11:19336110..19336134 (25 bp)
GTGCTAACTGACGTGAATGCCTACT
LOC_Os11g33950
OsAffx.31286.1.S1_at--782--7331Chr11:19336122..19336146 (25 bp)
GTGAATGCCTACTACAAAAAGCCAT
LOC_Os11g33950
OsAffx.31286.1.S1_at--120--4331Chr11:19336143..19336167 (25 bp)
CCATTGAACAAGCTGCGGGCTAGCT
LOC_Os11g33950
OsAffx.31286.1.S1_at--395--7591Chr11:19336159..19336183 (25 bp)
GGGCTAGCTTTATACACACCTACTT
LOC_Os11g33950
OsAffx.31286.1.S1_at--761--2611Chr11:19336188..19336212 (25 bp)
AACCCATGGGTGTTCTTCTCGCTTA
LOC_Os11g33950
OsAffx.31286.1.S1_at--387--791Chr11:19336193..19336217 (25 bp)
ATGGGTGTTCTTCTCGCTTATCGGG
LOC_Os11g33950
OsAffx.31286.1.S1_at--308--9331Chr11:19336234..19336258 (25 bp)
TCGCCACCGTCATGCAGACTGTCTA
LOC_Os11g33950
Target Sequence 
GATGGCAGATGGAGCAAGTCTTATTAACAATTGGGTGAATTTAAGATCCAAAGAGATCATCAAGAATGATTTGGGTAGCG
ATAAAGCGGTGGCAGATCTGATCAATAAGACCTTGGCTAAAGGTGCAGTTCTAAAAGAAGACTCTAGTATAATCGACGTG
CTAACTGACGTGAATGCCTACTACAAAAAGCCATTGAACAAGCTGCGGGCTAGCTTTATACACACCTACTTCAGCAACCC
ATGGGTGTTCTTCTCGCTTATCGGGGCAGTGATCCTGCTCGTCGCCACCGTCATGCAGACTGTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31286.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis