Browse Element(s) Details


OsAffx.3130.1.S1_at

Description tigr:9631.m00379
TID=OsAffx.3130.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AL161595 cytochrome P450-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0464011/11Cytochrome P450 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04610Os.20338.1.S1_at3/113+2133780..2134692expressed protein
LOC_Os03g04620Os.9661.1.S1_at11/113+2138442..2142449CCT motif family protein, expressed
LOC_Os03g04630OsAffx.24965.1.S1_at11/113+2149324..2151056Cytochrome P450 family protein
LOC_Os03g04640OsAffx.3130.1.S1_at11/113+2157804..2159327Cytochrome P450 family protein
LOC_Os03g04650Os.49872.1.S1_at11/113+2178883..2180634Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3130.1.S1_at--286--2751Chr03:2158767..2158791 (25 bp)
AAGAACCCATGCGTGGTGTCCAAGA
LOC_Os03g04640
OsAffx.3130.1.S1_at--343--3531Chr03:2158774..2158798 (25 bp)
CATGCGTGGTGTCCAAGATCCTAGA
LOC_Os03g04640
OsAffx.3130.1.S1_at--1108--1571Chr03:2158861..2158885 (25 bp)
AGCTCAGGCCACTCGTGTACTTGCA
LOC_Os03g04640
OsAffx.3130.1.S1_at--429--7011Chr03:2158877..2158901 (25 bp)
GTACTTGCACGCTGCACTGTCCGAA
LOC_Os03g04640
OsAffx.3130.1.S1_at--668--1891Chr03:2158892..2158916 (25 bp)
ACTGTCCGAAACACTCAGGCTGTAC
LOC_Os03g04640
OsAffx.3130.1.S1_at--1049--4531Chr03:2158919..2158943 (25 bp)
GCCCGTGCCGTTGGAGCACAAAGGC
LOC_Os03g04640
OsAffx.3130.1.S1_at--554--9151Chr03:2158963..2158987 (25 bp)
TGCCGAGCGGTCACGACGTGCGTCC
LOC_Os03g04640
OsAffx.3130.1.S1_at--68--9991Chr03:2159045..2159069 (25 bp)
TAGCGACTGCAGGAAGTTCAGGCCG
LOC_Os03g04640
OsAffx.3130.1.S1_at--1094--3971Chr03:2159113..2159137 (25 bp)
CGTACAAGTTCATGACCTTCAGCTC
LOC_Os03g04640
OsAffx.3130.1.S1_at--326--2831Chr03:2159118..2159142 (25 bp)
AAGTTCATGACCTTCAGCTCAGGGC
LOC_Os03g04640
OsAffx.3130.1.S1_at--391--2011Chr03:2159255..2159279 (25 bp)
ACTCTCCATCGTACTTCACATGAAG
LOC_Os03g04640
Target Sequence 
AAGAACCCATGCGTGGTGTCCAAGATCCTAGAGGAGCTCGACTCCGTCAACGGCATCACCACCCCTGACGGCATGGTGAC
CTTCGACCCGGACGAGCTCAGGCCACTCGTGTACTTGCACGCTGCACTGTCCGAAACACTCAGGCTGTACCCGCCCGTGC
CGTTGGAGCACAAAGGCGTGCTTGCCGCCGACGCGCTGCCGAGCGGTCACGACGTGCGTCCCGGCGACAAGATCGTGGTG
TCGCTGTTCGCGATGGCGAGGATGGAGGCCGTGTGGGGTAGCGACTGCAGGAAGTTCAGGCCGGAGCGGTGGATATCGAA
GGACGGCAAGCTGCGGTACGTACCGTCGTACAAGTTCATGACCTTCAGCTCAGGGCCACGGACCTGCCTCGGCAAGGACA
TGGCGTTCGTGCAGCTCAAGGCCGTGGCGGCGGCCGTGGTGAAGAACTTCGAGATCGAGGCCATGCCCGGCCATGTCGTC
GAGCCCGCACTCTCCATCGTACTTCACATGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3130.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis