Browse Element(s) Details


OsAffx.31300.1.S1_at

Description tigr:9639.m03134
TID=OsAffx.31300.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3489011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g34860Os.16466.1.S1_at11/1111+19924659..19930996ankryin repeat S-palmitoyl transferase, putative, expressed
LOC_Os11g34870OsAffx.7294.1.S1_at10/1111+19932099..19935754expressed protein
LOC_Os11g34870OsAffx.19160.1.A1_at5/1111+19932099..19935754expressed protein
LOC_Os11g34880Os.54278.1.S1_x_at11/1111+19943753..19949015NB-ARC domain containing protein, expressed
LOC_Os11g34880OsAffx.19161.1.S1_at11/1111+19943753..19949015NB-ARC domain containing protein, expressed
LOC_Os11g34890OsAffx.31300.1.S1_at11/1111+19951723..19952303hypothetical protein
LOC_Os11g34900OsAffx.19162.1.S1_at11/1111+19953150..19953499hypothetical protein
LOC_Os11g34910Os.10263.1.S1_at11/1111+19954062..19959051expressed protein
LOC_Os11g34910Os.45902.1.A1_x_at4/1111+19954062..19959051expressed protein
LOC_Os11g34910Os.56372.1.S1_at1/1111+19954062..19959051expressed protein
LOC_Os11g34920Os.52499.1.S1_at11/1111+19959841..19963404stripe rust resistance protein Yr10, putative, expressed
LOC_Os11g34930NANA11+19965420..19969008retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g34940Os.25955.1.S1_at11/1111+19976907..19977601expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31300.1.S1_at--421--7471Chr11:19951819..19951843 (25 bp)
GTGTGGAGGCCACCTGCCTACTTAA
LOC_Os11g34890
OsAffx.31300.1.S1_at--572--3811Chr11:19951832..19951856 (25 bp)
CTGCCTACTTAAGCTCAGGGAGAGC
LOC_Os11g34890
OsAffx.31300.1.S1_at--1060--1331Chr11:19951852..19951876 (25 bp)
AGAGCAACATGTGTGGCACCGAAGG
LOC_Os11g34890
OsAffx.31300.1.S1_at--594--2111Chr11:19951858..19951882 (25 bp)
ACATGTGTGGCACCGAAGGGTAATA
LOC_Os11g34890
OsAffx.31300.1.S1_at--437--231Chr11:19951880..19952137 (25 bp)
ATATAGGAGCCGGAGTCAGACTCGT
LOC_Os11g34890
OsAffx.31300.1.S1_at--267--8031Chr11:19952124..19952148 (25 bp)
GGAGTCAGACTCGTTGCCATTGACA
LOC_Os11g34890
OsAffx.31300.1.S1_at--1116--1391Chr11:19952130..19952154 (25 bp)
AGACTCGTTGCCATTGACACCGAGA
LOC_Os11g34890
OsAffx.31300.1.S1_at--159--6691Chr11:19952136..19952160 (25 bp)
GTTGCCATTGACACCGAGAAGCGGA
LOC_Os11g34890
OsAffx.31300.1.S1_at--611--8951Chr11:19952144..19952168 (25 bp)
TGACACCGAGAAGCGGACCTTGGGC
LOC_Os11g34890
OsAffx.31300.1.S1_at--214--4431Chr11:19952192..19952216 (25 bp)
GCCATGGAGCACAATCGGTGGCATG
LOC_Os11g34890
OsAffx.31300.1.S1_at--1029--1031Chr11:19952243..19952267 (25 bp)
AGGTGGCGACGACGTGGACCCCTCG
LOC_Os11g34890
Target Sequence 
GTGTGGAGGCCACCTGCCTACTTAAGCTCAGGGAGAGCAACATGTGTGGCACCGAAGGGTAATATAGGAGCCGGAGTCAG
ACTCGTTGCCATTGACACCGAGAAGCGGACCTTGGGCGTCTCCTCCCCATGGTGCGGCTGGCCATGGAGCACAATCGGTG
GCATGGGCGGCACGGGCAAAGCCAGCGAAGGAGGTGGCGACGACGTGGACCCCTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31300.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis