Browse Element(s) Details


OsAffx.31305.1.S1_at

Description tigr:9639.m03166
TID=OsAffx.31305.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=non-LTR retroelement reverse transcriptase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3523011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g35189NANA11+20133561..20133816NA
LOC_Os11g35200NANA11+20136350..20141312retrotransposon protein, putative, unclassified
LOC_Os11g35210OsAffx.19170.1.S1_at11/1111+20142111..20146357NB-ARC domain containing protein
LOC_Os11g35210OsAffx.7298.1.S1_at11/1111+20142111..20146357NB-ARC domain containing protein
LOC_Os11g35220Os.54257.1.S1_at11/1111+20149757..20152828Protein kinase domain containing protein, expressed
LOC_Os11g35230OsAffx.31305.1.S1_at11/1111+20157500..20157883hypothetical protein
LOC_Os11g35240OsAffx.5632.1.S1_at2/1111+20158965..20160583transposon protein, putative, unclassified, expressed
LOC_Os11g35240OsAffx.5632.1.S1_x_at2/1111+20158965..20160583transposon protein, putative, unclassified, expressed
LOC_Os11g35250Os.2987.3.S1_x_at2/1111+20161848..20162456transposon protein, putative, unclassified
LOC_Os11g35260OsAffx.7299.1.S1_at11/1111+20166289..20166966Protein kinase domain containing protein
LOC_Os11g35274OsAffx.19171.1.S1_at11/1111+20171076..20175376Protein kinase domain containing protein, expressed
LOC_Os11g35274OsAffx.19171.1.S1_s_at11/1111+20171076..20175376Protein kinase domain containing protein, expressed
LOC_Os11g35290OsAffx.19172.1.S1_at11/1111+20182437..20184422Protein kinase domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31305.1.S1_at--870--6531Chr11:20157806..20157830 (25 bp)
GATTTCAGTGATCAAGGCTGTCATC
LOC_Os11g35230
OsAffx.31305.1.S1_at--1156--3871Chr11:20157789..20157813 (25 bp)
CTGTCATCCTCTGGGCAGCATACAA
LOC_Os11g35230
OsAffx.31305.1.S1_at--1025--1951Chr11:20157744..20157768 (25 bp)
ACTGTCCAACAGTGCACTTTAATCT
LOC_Os11g35230
OsAffx.31305.1.S1_at--72--3851Chr11:20157721..20157745 (25 bp)
CTGCAGGAACTGCTTACAGCACATT
LOC_Os11g35230
OsAffx.31305.1.S1_at--538--5111Chr11:20157703..20157727 (25 bp)
GCACATTGTGAGCTAAGTTGTCTTG
LOC_Os11g35230
OsAffx.31305.1.S1_at--334--1251Chr11:20157688..20157712 (25 bp)
AGTTGTCTTGAGGAACCTTTCGCTC
LOC_Os11g35230
OsAffx.31305.1.S1_at--398--8171Chr11:20157677..20157701 (25 bp)
GGAACCTTTCGCTCATGAGGAGATA
LOC_Os11g35230
OsAffx.31305.1.S1_at--536--3091Chr11:20157652..20157676 (25 bp)
AATAAAGTGGTTGCCTCTCTTCCAT
LOC_Os11g35230
OsAffx.31305.1.S1_at--739--3631Chr11:20157634..20157658 (25 bp)
CTTCCATCAGATAAATCACCCGGTC
LOC_Os11g35230
OsAffx.31305.1.S1_at--493--1811Chr11:20157617..20157641 (25 bp)
ACCCGGTCCAGATGGATTCAATGGG
LOC_Os11g35230
OsAffx.31305.1.S1_at--116--5351Chr11:20157559..20157583 (25 bp)
GAAGATTTTACTCACTTTGTCAAGG
LOC_Os11g35230
Target Sequence 
GATTTCAGTGATCAAGGCTGTCATCCTCTGGGCAGCATACAAGGAGAGATTGGGGGAAACAAACTGTCCAACAGTGCACT
TTAATCTGCAGGAACTGCTTACAGCACATTGTGAGCTAAGTTGTCTTGAGGAACCTTTCGCTCATGAGGAGATAAATAAA
GTGGTTGCCTCTCTTCCATCAGATAAATCACCCGGTCCAGATGGATTCAATGGGGACTTTCTCAAAGCCTGCGGGGACAT
CGTAAAAGAAGATTTTACTCACTTTGTCAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31305.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis