Browse Element(s) Details


OsAffx.19171.1.S1_s_at

Description tigr:9639.m03170
TID=OsAffx.19171.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3527411/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g35210OsAffx.19170.1.S1_at11/1111+20142111..20146357NB-ARC domain containing protein
LOC_Os11g35210OsAffx.7298.1.S1_at11/1111+20142111..20146357NB-ARC domain containing protein
LOC_Os11g35220Os.54257.1.S1_at11/1111+20149757..20152828Protein kinase domain containing protein, expressed
LOC_Os11g35230OsAffx.31305.1.S1_at11/1111+20157500..20157883hypothetical protein
LOC_Os11g35240OsAffx.5632.1.S1_at2/1111+20158965..20160583transposon protein, putative, unclassified, expressed
LOC_Os11g35240OsAffx.5632.1.S1_x_at2/1111+20158965..20160583transposon protein, putative, unclassified, expressed
LOC_Os11g35250Os.2987.3.S1_x_at2/1111+20161848..20162456transposon protein, putative, unclassified
LOC_Os11g35260OsAffx.7299.1.S1_at11/1111+20166289..20166966Protein kinase domain containing protein
LOC_Os11g35274OsAffx.19171.1.S1_at11/1111+20171076..20175376Protein kinase domain containing protein, expressed
LOC_Os11g35274OsAffx.19171.1.S1_s_at11/1111+20171076..20175376Protein kinase domain containing protein, expressed
LOC_Os11g35290OsAffx.19172.1.S1_at11/1111+20182437..20184422Protein kinase domain containing protein
LOC_Os11g35300OsAffx.31235.1.S1_at11/1111+20194742..20200375hypothetical protein
LOC_Os11g35300OsAffx.31235.2.S1_at5/1111+20194742..20200375hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19171.1.S1_s_at--674--8231Chr11:20171456..20171480 (25 bp)
GGCACTCCATTGCATCAATTTGAAA
LOC_Os11g35274
OsAffx.19171.1.S1_s_at--590--5591Chr11:20171435..20171459 (25 bp)
GAAATTGAGCAAACGGCCGACGATG
LOC_Os11g35274
OsAffx.19171.1.S1_s_at--296--9371Chr11:20171382..20171406 (25 bp)
TCAGAAGGTGGTGTAACGGCCATGA
LOC_Os11g35274
OsAffx.19171.1.S1_s_at--278--1951Chr11:20171367..20171391 (25 bp)
ACGGCCATGAGGGTTACAGAATGTT
LOC_Os11g35274
OsAffx.19171.1.S1_s_at--962--5272Chr11:20171349..20171373 (25 bp)
GAATGTTGATTCAACCTGAATGCAC
LOC_Os11g35274
OsAffx.19171.1.S1_s_at--255--4831Chr11:20171307..20171331 (25 bp)
GCTCACAATTTGTTGACTGAAGCTG
LOC_Os11g35274
OsAffx.19171.1.S1_s_at--849--8811Chr11:20171297..20171321 (25 bp)
TGTTGACTGAAGCTGGACCTACCTG
LOC_Os11g35274
OsAffx.19171.1.S1_s_at--945--1611Chr11:20171287..20171311 (25 bp)
AGCTGGACCTACCTGATGATCGATG
LOC_Os11g35274
OsAffx.19171.1.S1_s_at--1090--6132Chr11:20176676..20176700 (25 bp)
GAGGTCGAAGATTCATAATCCCTTG
NONE
OsAffx.19171.1.S1_s_at--136--10792Chr11:20176577..20176601 (25 bp)
TTGTTGGTTGTGTTGCATGTTGCAT
NONE
OsAffx.19171.1.S1_s_at--384--6671Chr11:20171129..20171153 (25 bp)
GTTGCATTGTTGTCATGAGAACATT
LOC_Os11g35274
Target Sequence 
GGCACTCCATTGCATCAATTTGAAATTGAGCAAACGGCCGACGATGAAGGAGGTGGCAGAACGCTTGAAGAAGATCAGAA
GGTGGTGTAACGGCCATGAGGGTTACAGAATGTTGATTCAACCTGAATGCACAATGGCATTGTCTCGTCGCTCACAATTT
GTTGACTGAAGCTGGACCTACCTGATGATCGATGCGCTACCTCATTCAGAGGTCGAAGATTCATAATCCCTTGTAGTCAT
TCTCACTTCACGATAGACATTGTCGTTTTTTTTACATCAAAACACTCTTTTGCATGTATTTTTATTCTGTTGTTGGTTGT
GTTGCATGTTGCATTGTTGTCATGAGAACATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19171.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis