Browse Element(s) Details


OsAffx.31235.1.S1_at

Description tigr:9639.m03173
TID=OsAffx.31235.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3530011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g35274OsAffx.19171.1.S1_at11/1111+20171076..20175376Protein kinase domain containing protein, expressed
LOC_Os11g35274OsAffx.19171.1.S1_s_at11/1111+20171076..20175376Protein kinase domain containing protein, expressed
LOC_Os11g35290OsAffx.19172.1.S1_at11/1111+20182437..20184422Protein kinase domain containing protein
LOC_Os11g35300OsAffx.31235.1.S1_at11/1111+20194742..20200375hypothetical protein
LOC_Os11g35300OsAffx.31235.2.S1_at5/1111+20194742..20200375hypothetical protein
LOC_Os11g35310Os.51241.1.S1_at3/1111+20201419..20201869Phytosulfokine precursor protein containing protein
LOC_Os11g35320Os.54971.1.S1_at11/1111+20208259..20212913BSD domain containing protein, expressed
LOC_Os11g35320Os.27573.1.S1_at11/1111+20208259..20212913BSD domain containing protein, expressed
LOC_Os11g35320OsAffx.7300.1.S1_x_at11/1111+20208259..20212913BSD domain containing protein, expressed
LOC_Os11g35320OsAffx.7300.1.S1_at11/1111+20208259..20212913BSD domain containing protein, expressed
LOC_Os11g35320OsAffx.24114.2.S1_at1/1111+20208259..20212913BSD domain containing protein, expressed
LOC_Os11g35320OsAffx.24114.2.S1_x_at1/1111+20208259..20212913BSD domain containing protein, expressed
LOC_Os11g35330OsAffx.31308.1.S1_at11/1111+20215165..20217219Protein kinase domain containing protein, expressed
LOC_Os11g35340Os.53271.1.S1_at11/1111+20219433..20222337protease, putative, expressed
LOC_Os11g35350Os.10539.1.S1_at11/1111+20222676..20223328expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31235.1.S1_at--983--9291Chr11:20198087..20198345 (25 bp)
TCCGCCAGGCACGAGCACAGAGAGG
LOC_Os11g35300
OsAffx.31235.1.S1_at--412--8031Chr11:20200029..20200053 (25 bp)
GGAGGGTGCAGTTATCATTGCCAAT
LOC_Os11g35300
OsAffx.31235.1.S1_at--30--10171Chr11:20200041..20200065 (25 bp)
TATCATTGCCAATTCCATGCACAAG
LOC_Os11g35300
OsAffx.31235.1.S1_at--121--7111Chr11:20200076..20200100 (25 bp)
GTCACCGAATCTGCCCATGAGAGCT
LOC_Os11g35300
OsAffx.31235.1.S1_at--389--3051Chr11:20200083..20200107 (25 bp)
AATCTGCCCATGAGAGCTTCCGCCG
LOC_Os11g35300
OsAffx.31235.1.S1_at--998--9411Chr11:20200108..20200132 (25 bp)
TCGTGGTCAAGGATTAGGATATGCT
LOC_Os11g35300
OsAffx.31235.1.S1_at--904--7931Chr11:20200118..20200142 (25 bp)
GGATTAGGATATGCTTCCCTTGAGT
LOC_Os11g35300
OsAffx.31235.1.S1_at--323--6511Chr11:20200125..20200149 (25 bp)
GATATGCTTCCCTTGAGTACGTCGA
LOC_Os11g35300
OsAffx.31235.1.S1_at--966--591Chr11:20200128..20200152 (25 bp)
ATGCTTCCCTTGAGTACGTCGACGG
LOC_Os11g35300
OsAffx.31235.1.S1_at--461--4391Chr11:20200160..20200184 (25 bp)
GCCAAGGCGCCATTGAGACGGAAGA
LOC_Os11g35300
OsAffx.31235.1.S1_at--647--1931Chr11:20200177..20200201 (25 bp)
ACGGAAGAGGCCACGATGCTGCAGT
LOC_Os11g35300
Target Sequence 
TCCGCCAGGCACGAGCACAGAGAGGGAGGGTGCAGTTATCATTGCCAATTCCATGCACAAGAGCCACCGCCGTCACCGAA
TCTGCCCATGAGAGCTTCCGCCGTCGTGGTCAAGGATTAGGATATGCTTCCCTTGAGTACGTCGACGGGGAGAAGGCCAA
GGCGCCATTGAGACGGAAGAGGCCACGATGCTGCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31235.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis