Browse Element(s) Details


Os.51241.1.S1_at

Description gb:AK062316.1
DB_XREF= gi:32972334
TID=Os.51241.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51241 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-101-C04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-101-C04, full insert sequence.
FL= gb:AK062316.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g353103/11Phytosulfokine precursor protein containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g35290OsAffx.19172.1.S1_at11/1111+20182437..20184422Protein kinase domain containing protein
LOC_Os11g35300OsAffx.31235.1.S1_at11/1111+20194742..20200375hypothetical protein
LOC_Os11g35300OsAffx.31235.2.S1_at5/1111+20194742..20200375hypothetical protein
LOC_Os11g35310Os.51241.1.S1_at3/1111+20201419..20201869Phytosulfokine precursor protein containing protein
LOC_Os11g35320Os.54971.1.S1_at11/1111+20208259..20212913BSD domain containing protein, expressed
LOC_Os11g35320Os.27573.1.S1_at11/1111+20208259..20212913BSD domain containing protein, expressed
LOC_Os11g35320OsAffx.7300.1.S1_x_at11/1111+20208259..20212913BSD domain containing protein, expressed
LOC_Os11g35320OsAffx.7300.1.S1_at11/1111+20208259..20212913BSD domain containing protein, expressed
LOC_Os11g35320OsAffx.24114.2.S1_at1/1111+20208259..20212913BSD domain containing protein, expressed
LOC_Os11g35320OsAffx.24114.2.S1_x_at1/1111+20208259..20212913BSD domain containing protein, expressed
LOC_Os11g35330OsAffx.31308.1.S1_at11/1111+20215165..20217219Protein kinase domain containing protein, expressed
LOC_Os11g35340Os.53271.1.S1_at11/1111+20219433..20222337protease, putative, expressed
LOC_Os11g35350Os.10539.1.S1_at11/1111+20222676..20223328expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51241.1.S1_at--1100--1251Chr11:20201400..20201424 (25 bp)
AGATATAGCTACTCCAGCCATGGCG
NONE
Os.51241.1.S1_at--856--3771Chr11:20201476..20201500 (25 bp)
CTCTGCATCTCAGCTACTCATGAGG
LOC_Os11g35310
Os.51241.1.S1_at--916--4611Chr11:20201503..20201527 (25 bp)
GCGAGAACAGCATCAGGCCAACCGA
LOC_Os11g35310
Os.51241.1.S1_at--334--4731Chr11:20201821..20201845 (25 bp)
GCTGGTGGCGCACACAGACTACATC
LOC_Os11g35310
Os.51241.1.S1_at--210--10111Chr11:20201892..20201916 (25 bp)
TATGGTAGCCTAGCTCATGCAGCAG
NONE
Os.51241.1.S1_at--1000--2231Chr11:20201935..20201959 (25 bp)
ACAATTCGCTTTGATTTCTGTTTGC
NONE
Os.51241.1.S1_at--305--6851Chr11:20201954..20201978 (25 bp)
GTTTGCTCCAATCAGTTCACTTTCA
NONE
Os.51241.1.S1_at--635--6271Chr11:20201991..20202015 (25 bp)
GATGTCATCTTATCTTATCCAATCA
NONE
Os.51241.1.S1_at--691--5691Chr11:20202031..20202055 (25 bp)
GACTTCTCTCTGTATGATCAATGGA
NONE
Os.51241.1.S1_at--895--611Chr11:20202061..20202085 (25 bp)
ATGCGTGTCAACTTCAGGGTTTTTT
NONE
Os.51241.1.S1_at--101--10371Chr11:20202084..20202108 (25 bp)
TTTTTCCAGATAATGTCTCCTCAGT
NONE
Target Sequence 
AGATATAGCTACTCCAGCCATGGCGCCGCCACGGTGCACCGCTCTACTGCTGCTGGCGTCTCTCCTCCTCTTCTTCCTCT
GCATCTCAGCTACTCATGAGGNCTGCGAGAACAGCATCAGGCCAACCGATNCCAAGNAACAAGNAACAAGAACAGCATGG
CAAGGTGGAGGAGGAGACGATGGCGGCGAGCTTCGCGGCGGTGGAAGNGCAGTNTNNGAGGGGAAGAAGGNAGAGGAGGN
GGAGTGCTTGATGAGGAGGACGCTGGTGGCGCACACAGACTACATCTACACCCAGGGAAATCACAACTGATAGTTAGTAC
AATCTACTACTATATGGTAGCCTAGCTCATGCAGCAGCGAAAATTGGATGAATTTACAATTCGCTTTGATTTCTGTTTGC
TCCAATCAGTTCACTTTCACTGTGACTGATTGATGTCATCTTATCTTATCCAATCATTAATTGCTGCTGCTGACTTCTCT
CTGTATGATCAATGGATCAAAATGCGTGTCAACTTCAGGGTTTTTTTTCCAGATAATGTCTCCTCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51241.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis