Browse Element(s) Details


OsAffx.31235.2.S1_at

Description tigr:9639.m02802
TID=OsAffx.31235.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g353005/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g35274OsAffx.19171.1.S1_at11/1111+20171076..20175376Protein kinase domain containing protein, expressed
LOC_Os11g35274OsAffx.19171.1.S1_s_at11/1111+20171076..20175376Protein kinase domain containing protein, expressed
LOC_Os11g35290OsAffx.19172.1.S1_at11/1111+20182437..20184422Protein kinase domain containing protein
LOC_Os11g35300OsAffx.31235.1.S1_at11/1111+20194742..20200375hypothetical protein
LOC_Os11g35300OsAffx.31235.2.S1_at5/1111+20194742..20200375hypothetical protein
LOC_Os11g35310Os.51241.1.S1_at3/1111+20201419..20201869Phytosulfokine precursor protein containing protein
LOC_Os11g35320Os.54971.1.S1_at11/1111+20208259..20212913BSD domain containing protein, expressed
LOC_Os11g35320Os.27573.1.S1_at11/1111+20208259..20212913BSD domain containing protein, expressed
LOC_Os11g35320OsAffx.7300.1.S1_x_at11/1111+20208259..20212913BSD domain containing protein, expressed
LOC_Os11g35320OsAffx.7300.1.S1_at11/1111+20208259..20212913BSD domain containing protein, expressed
LOC_Os11g35320OsAffx.24114.2.S1_at1/1111+20208259..20212913BSD domain containing protein, expressed
LOC_Os11g35320OsAffx.24114.2.S1_x_at1/1111+20208259..20212913BSD domain containing protein, expressed
LOC_Os11g35330OsAffx.31308.1.S1_at11/1111+20215165..20217219Protein kinase domain containing protein, expressed
LOC_Os11g35340Os.53271.1.S1_at11/1111+20219433..20222337protease, putative, expressed
LOC_Os11g35350Os.10539.1.S1_at11/1111+20222676..20223328expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31235.2.S1_at--1101--4332Chr11:20197830..20197854 (25 bp)
CCAGTCGAAGTTGTCGCAGAAGAAA
LOC_Os11g35300
OsAffx.31235.2.S1_at--152--6631Chr11:17499372..17499396 (25 bp)
GTTGTCGCAGAAGAAATCGACGATA
NONE
OsAffx.31235.2.S1_at--356--211Chr11:17499394..17499418 (25 bp)
ATATTGGGGTTTTGGCTGGCCGTCT
NONE
OsAffx.31235.2.S1_at--657--8453Chr11:17499410..17499434 (25 bp)
TGGCCGTCTTGTTGATGCAGGATCC
NONE
OsAffx.31235.2.S1_at--751--4493Chr11:17499412..17499436 (25 bp)
GCCGTCTTGTTGATGCAGGATCCGA
NONE
OsAffx.31235.2.S1_at--692--7133Chr11:17499415..17499439 (25 bp)
GTCTTGTTGATGCAGGATCCGAACG
NONE
OsAffx.31235.2.S1_at--648--8813Chr11:20197875..20197899 (25 bp)
TGTTGATGCAGGATCCGAACGGGAA
LOC_Os11g35300
OsAffx.31235.2.S1_at--1022--5071Chr11:17499653..17499677 (25 bp)
GCACGGCGACGAGCAACCGGCAGCC
NONE
OsAffx.31235.2.S1_at--119--2631Chr11:17499667..17499691 (25 bp)
AACCGGCAGCCGACGACCTTGTGTC
NONE
OsAffx.31235.2.S1_at--747--8251Chr11:17499671..17499695 (25 bp)
GGCAGCCGACGACCTTGTGTCCTTT
NONE
OsAffx.31235.2.S1_at--265--1671Chr11:17499674..17499698 (25 bp)
AGCCGACGACCTTGTGTCCTTTCTC
NONE
Target Sequence 
CCAGTCGAAGTTGTCGCAGAAGAAATCGACGATATTGGGGTTTTGGCTGGCCGTCTTGTTGATGCAGGATCCGAACGGGA
AGCGGTTCTCCAGCTGCATCACTCGGATCGACGCTCCGGACATGGTCGCGCCGCCGCCCAACTCGAGTCGGTCGCCGTTG
TGGCGGTGCCATTCCCGGCGCAGGGCCACCTCAACCAGCTCCTGCATCTGTCGTTGCAGCTCGCGTCGCTCGGCCTTGAG
GTGCACTACGCCGCGCCGGCGCCGCACGTCCGCCAGGCGCGAGCGCGCGTGCACGGCGACGAGCAACCGGCAGCCGACGA
CCTTGTGTCCTTTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31235.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis