Browse Element(s) Details


OsAffx.7298.1.S1_at

Description tigr:9639.m03163
TID=OsAffx.7298.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3521011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g35150Os.54690.1.S1_at9/1111+20115823..20117113expressed protein
LOC_Os11g35160NANA11+20121983..20124404retrotransposon protein, putative, unclassified
LOC_Os11g35170Os.24831.3.S1_s_at6/1111+20126608..20127864retrotransposon protein, putative, unclassified
LOC_Os11g35170Os.24831.1.S1_x_at5/1111+20126608..20127864retrotransposon protein, putative, unclassified
LOC_Os11g35170Os.24831.3.S1_x_at3/1111+20126608..20127864retrotransposon protein, putative, unclassified
LOC_Os11g35170Os.24831.4.S1_x_at1/1111+20126608..20127864retrotransposon protein, putative, unclassified
LOC_Os11g35180NANA11+20131103..20131924retrotransposon protein, putative, unclassified
LOC_Os11g35189NANA11+20133561..20133816NA
LOC_Os11g35200NANA11+20136350..20141312retrotransposon protein, putative, unclassified
LOC_Os11g35210OsAffx.19170.1.S1_at11/1111+20142111..20146357NB-ARC domain containing protein
LOC_Os11g35210OsAffx.7298.1.S1_at11/1111+20142111..20146357NB-ARC domain containing protein
LOC_Os11g35220Os.54257.1.S1_at11/1111+20149757..20152828Protein kinase domain containing protein, expressed
LOC_Os11g35230OsAffx.31305.1.S1_at11/1111+20157500..20157883hypothetical protein
LOC_Os11g35240OsAffx.5632.1.S1_at2/1111+20158965..20160583transposon protein, putative, unclassified, expressed
LOC_Os11g35240OsAffx.5632.1.S1_x_at2/1111+20158965..20160583transposon protein, putative, unclassified, expressed
LOC_Os11g35250Os.2987.3.S1_x_at2/1111+20161848..20162456transposon protein, putative, unclassified
LOC_Os11g35260OsAffx.7299.1.S1_at11/1111+20166289..20166966Protein kinase domain containing protein
LOC_Os11g35274OsAffx.19171.1.S1_at11/1111+20171076..20175376Protein kinase domain containing protein, expressed
LOC_Os11g35274OsAffx.19171.1.S1_s_at11/1111+20171076..20175376Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7298.1.S1_at--546--2831Chr11:20143411..20143434 (24 bp)
AAGTTACATCCATATCTGCAGAGGG
LOC_Os11g35210
OsAffx.7298.1.S1_at--1014--5471Chr11:20143552..20143576 (25 bp)
GACACTGGCCGGGATTACTTCAATG
LOC_Os11g35210
OsAffx.7298.1.S1_at--75--8731Chr11:20143583..20143607 (25 bp)
TGTCTGTATCTTTCTTTCAACCCAT
LOC_Os11g35210
OsAffx.7298.1.S1_at--672--1171Chr11:20143631..20143655 (25 bp)
AGTACAGCATGCATGATCTTCTCCA
LOC_Os11g35210
OsAffx.7298.1.S1_at--1144--6411Chr11:20143645..20143669 (25 bp)
GATCTTCTCCATGAGTTTGCAGAGT
LOC_Os11g35210
OsAffx.7298.1.S1_at--661--2831Chr11:20143715..20143739 (25 bp)
AAGTAATACCATGCACGATTCGTCA
LOC_Os11g35210
OsAffx.7298.1.S1_at--469--5091Chr11:20143727..20143751 (25 bp)
GCACGATTCGTCATTTATCTGTTTG
LOC_Os11g35210
OsAffx.7298.1.S1_at--1043--9931Chr11:20143802..20143826 (25 bp)
TACGCACTGTTATCTGCACTGAACC
LOC_Os11g35210
OsAffx.7298.1.S1_at--819--6231Chr11:20143837..20143860 (24 bp)
GATGGAAACGATCTCTTCAATCAGA
LOC_Os11g35210
OsAffx.7298.1.S1_at--1128--4931Chr11:20144250..20144274 (25 bp)
GCTTGGCGGCAGTTTGAGTATCACA
LOC_Os11g35210
OsAffx.7298.1.S1_at--596--5391Chr11:20144349..20144373 (25 bp)
GAAGCTTGTCTGGAGTTGCAATAAC
LOC_Os11g35210
Target Sequence 
AAGTTACATCCATATCTGCAGAGGGATTAGTTGATTCAGGCAACCTGAATAAGAGTATGGAAGACACTGGCCGGGATTAC
TTCAATGAGATGGTGTCTGTATCTTTCTTTCAACCCATATCTGAAATGCATGTCAGTAAACAGTACAGCATGCATGATCT
TCTCCATGAGTTTGCAGAGTCACTTTCAAAAGAAGACTGCTTTAGATTAGAAGATGATAGTGAGAAAGTAATACCATGCA
CGATTCGTCATTTATCTGTTTGTATTGAGAGTGTGAAACTGCATAAGCAAAGTATCTGCAAGTTACATCATTTACGCACT
GTTATCTGCACTGAACCACTAGTGGATGATGGAAACGATCTCTTCAATCAGAAGGGTTATGAGTTATGGCAACTGAGGGA
CATGAACGAGCTTGGCGGCAGTTTGAGTATCACAAATCTCGAGAATGTCACTGGAAAGGATGAAGCCTTGGAGTCAAAGC
TACATGAAAAAAGTCATGTTAAAACATTGAAGCTTGTCTGGAGTTGCAATAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7298.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis