Browse Element(s) Details

Os.54690.1.S1_at

Description

gb:AK106479.1
DB_XREF= gi:32991688
TID=Os.54690.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54690 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-104-E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-104-E02, full insert sequence.
FL= gb:AK106479.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os11g35150	9/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os11g35130	OsAffx.32056.1.S1_at	11/11	11	+	20093852..20097007	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g35130	OsAffx.32056.1.S1_x_at	10/11	11	+	20093852..20097007	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g35140	OsAffx.10637.1.S1_s_at	11/11	11	+	20098860..20102546	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g35140	OsAffx.10637.3.S1_s_at	10/11	11	+	20098860..20102546	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g35140	OsAffx.10637.4.S1_s_at	7/11	11	+	20098860..20102546	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g35150	Os.54690.1.S1_at	9/11	11	+	20115823..20117113	expressed protein
LOC_Os11g35160	NA	NA	11	+	20121983..20124404	retrotransposon protein, putative, unclassified
LOC_Os11g35170	Os.24831.3.S1_s_at	6/11	11	+	20126608..20127864	retrotransposon protein, putative, unclassified
LOC_Os11g35170	Os.24831.1.S1_x_at	5/11	11	+	20126608..20127864	retrotransposon protein, putative, unclassified
LOC_Os11g35170	Os.24831.3.S1_x_at	3/11	11	+	20126608..20127864	retrotransposon protein, putative, unclassified
LOC_Os11g35170	Os.24831.4.S1_x_at	1/11	11	+	20126608..20127864	retrotransposon protein, putative, unclassified
LOC_Os11g35180	NA	NA	11	+	20131103..20131924	retrotransposon protein, putative, unclassified
LOC_Os11g35189	NA	NA	11	+	20133561..20133816	NA
LOC_Os11g35200	NA	NA	11	+	20136350..20141312	retrotransposon protein, putative, unclassified
LOC_Os11g35210	OsAffx.19170.1.S1_at	11/11	11	+	20142111..20146357	NB-ARC domain containing protein
LOC_Os11g35210	OsAffx.7298.1.S1_at	11/11	11	+	20142111..20146357	NB-ARC domain containing protein

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.54690.1.S1_at--389--509	1	NONE	GCACGGGTCAAAGGTACGCATTGGT	NONE
Os.54690.1.S1_at--924--737	1	Chr11:20116298..20116322 (25 bp)	GTGATGGCCTAATCTCGTTGTTGGA	LOC_Os11g35150
Os.54690.1.S1_at--354--665	1	Chr11:20116282..20116306 (25 bp)	GTTGTTGGATTCAAGCACATCGCAA	LOC_Os11g35150
Os.54690.1.S1_at--63--669	1	Chr11:20116220..20116244 (25 bp)	GTTGCCTCCGATGCAGGCGTTGCTG	LOC_Os11g35150
Os.54690.1.S1_at--847--527	1	Chr11:20115933..20115957 (25 bp)	GAATGAGCATCACGAGCTGGACTTA	LOC_Os11g35150
Os.54690.1.S1_at--610--471	1	Chr11:20115918..20115942 (25 bp)	GCTGGACTTAGCTTGTGAGGTTTTC	LOC_Os11g35150
Os.54690.1.S1_at--496--493	1	Chr11:20115908..20115932 (25 bp)	GCTTGTGAGGTTTTCGATCCTACCC	LOC_Os11g35150
Os.54690.1.S1_at--139--637	1	Chr11:20115893..20115917 (25 bp)	GATCCTACCCTCCAAGAATGAACGG	LOC_Os11g35150
Os.54690.1.S1_at--860--1013	1	Chr11:20115848..20115872 (25 bp)	TATGCTGGACCGGAACAATGCTCTA	LOC_Os11g35150
Os.54690.1.S1_at--528--551	1	Chr11:20115836..20115860 (25 bp)	GAACAATGCTCTAATCCTAATCCTA	LOC_Os11g35150
Os.54690.1.S1_at--117--57	1	Chr11:20115823..20115847 (25 bp)	ATCCTAATCCTAATCAATCCCTTAT	NONE

Target Sequence

GCACGGGTCAAAGGTACGCATTGGTGATGGCCTAATCTCGTTGTTGGATTCAAGCACATCGCAACCGATGTCGCCTCCTC
TCGCTGGTTCTCGCGCTCCTCGTTGCCTCCGATGCAGGCGTTGCTGGCCCCCAACGCGCTGTCGTCCAACACCGCACCTC
CACACCGTGCGACGTCCCCGGCACCGACCACACCTCCCTCGGCACCAACCACCCCTCCTACTCCTCGTCTTCTCTACCGT
CGCGCAACAGCCTCCGACGCAGGCGCCGTCGGTGCCCATCACGCCGCCGTCCAACGCCCCGCCGCCAGCGCCCCCGGCAC
CGACCACGCCTCCCTTGGCACCACCGGTGCCGACCACCTGAGCACAGTGGTGGAGACACAGTCTGAGAGAATGAGCATCA
CGAGCTGGACTTAGCTTGTGAGGTTTTCGATCCTACCCTCCAAGAATGAACGGCGGGATTTAGATTGGTATAATATGCTG
GACCGGAACAATGCTCTAATCCTAATCCTAATCAATCCCTTAT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis