Browse Element(s) Details


OsAffx.31349.2.S1_x_at

Description tigr:9634.m01624
TID=OsAffx.31349.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1616011/11expressed protein
LOC_Os11g3763010/11hypothetical protein
LOC_Os06g161509/11hypothetical protein
LOC_Os06g155601/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g16120NANA6+9176214..9177125hypothetical protein
LOC_Os06g16130OsAffx.10473.1.S1_at4/116+9179933..9182962transposon protein, putative, Mutator sub-class
LOC_Os06g16130OsAffx.22702.1.S1_at1/116+9179933..9182962transposon protein, putative, Mutator sub-class
LOC_Os06g16140OsAffx.27664.1.S1_at11/116+9185768..9188474expressed protein
LOC_Os06g16150OsAffx.31349.2.S1_x_at9/116+9195475..9196710hypothetical protein
LOC_Os06g16150OsAffx.31349.1.S1_x_at8/116+9195475..9196710hypothetical protein
LOC_Os06g16160OsAffx.31349.2.S1_x_at11/116+9201969..9205436expressed protein
LOC_Os06g16160OsAffx.31349.1.S1_x_at6/116+9201969..9205436expressed protein
LOC_Os06g16160OsAffx.15454.1.S1_x_at1/116+9201969..9205436expressed protein
LOC_Os06g16160OsAffx.15454.2.S1_x_at1/116+9201969..9205436expressed protein
LOC_Os06g16170OsAffx.15454.2.S1_x_at11/116+9206919..9208514expressed protein
LOC_Os06g16170OsAffx.15454.1.S1_x_at4/116+9206919..9208514expressed protein
LOC_Os06g16180NANA6+9214329..9214598hypothetical protein
LOC_Os06g16190NANA6+9218661..9218870hypothetical protein
LOC_Os06g16200OsAffx.15454.1.S1_x_at11/116+9220517..9222358expressed protein
LOC_Os06g16200OsAffx.15454.2.S1_x_at5/116+9220517..9222358expressed protein
LOC_Os06g16210NANA6+9229392..9230028hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31349.2.S1_x_at--721--8913Chr11:21707504..21707527 (24 bp)
TACGTCGTCGTCTCCGCCGGGAGCT
LOC_Os11g37630
OsAffx.31349.2.S1_x_at--209--8095Chr06:8825325..8825348 (24 bp)
GGAGCTGGTTCTACCGGCCGTCGAT
LOC_Os06g15560
OsAffx.31349.2.S1_x_at--406--8412Chr06:9202483..9202507 (25 bp)
GGCCGTCGATGTTCTACGACCGCCG
LOC_Os06g16160
OsAffx.31349.2.S1_x_at--507--9413Chr11:21707437..21707794 (25 bp)
TCGTCGGGTGCAACACCTGCCTGTC
LOC_Os11g37630
OsAffx.31349.2.S1_x_at--308--9273Chr11:21707389..21707413 (25 bp)
TCCGTTACTCCCTCCGGATGGCGTT
LOC_Os11g37630
OsAffx.31349.2.S1_x_at--774--7393Chr11:21707294..21707318 (25 bp)
GTGATCGTGCGGACGATCTCGCCGT
LOC_Os11g37630
OsAffx.31349.2.S1_x_at--550--9333Chr11:21707276..21707300 (25 bp)
TCGCCGTCGCACTACGAGAACGGGA
LOC_Os11g37630
OsAffx.31349.2.S1_x_at--444--833Chr11:21707183..21707207 (25 bp)
ATGGAGAAGGACATGCACCGGATAC
LOC_Os11g37630
OsAffx.31349.2.S1_x_at--596--9012Chr11:21707170..21707194 (25 bp)
TGCACCGGATACAGGTCGAGGAGTT
LOC_Os11g37630
OsAffx.31349.2.S1_x_at--224--1812Chr11:21707056..21707080 (25 bp)
ACCCGAGCAAGTACAGGCTGTGGCA
LOC_Os11g37630
OsAffx.31349.2.S1_x_at--367--8653Chr11:21707038..21707062 (25 bp)
TGTGGCAGCCGGACAAGTTCAAGGT
LOC_Os11g37630
Target Sequence 
TACGTCGTCGTCTCCGCCGGGAGCTGGTTCTACCGGCCGTCGATGTTCTACGACCGCCGCGGCCGCCTCGTCGGGTGCAA
CACCTGCCTGTCCCCGAACGTCACCGACCTCACCCTCCGTTACTCCCTCCGGATGGCGTTCCGGAGCGCGCTCCGGGCGG
CGGCGACGGGCTCGCACCGCCACGCCACGAGGAGGACGGTGATCGTGCGGACGATCTCGCCGTCGCACTACGAGAACGGG
ACGTGGAACGGGGACGGGGACTGCCTCCGGACTCGGCCGGCGCGGCGCGGCGAGTGGGAGTTGAACGCCATGGAGAAGGA
CATGCACCGGATACAGGTCGAGGAGTTCGCGGCGGCGGCGGAGGAGACGGCGGGGAAGAGGGGGAAAGAGGCGGCGAGGA
TGCTGCTGATGGACGCGACGGAGGCCATGGCGCAGCGGCCGGACGGCCACCCGAGCAAGTACAGGCTGTGGCAGCCGGAC
AAGTTCAAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31349.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis