Browse Element(s) Details


OsAffx.31366.1.S1_at

Description tigr:9639.m03487
TID=OsAffx.31366.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3843011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g38390OsAffx.7340.2.S1_at11/1111+22234094..22236108hypothetical protein
LOC_Os11g38400OsAffx.31364.1.S1_at11/1111+22237414..22237797hypothetical protein
LOC_Os11g38410NANA11+22245684..22246118hypothetical protein
LOC_Os11g38420Os.20602.2.S1_x_at10/1111+22253727..22255907hAT family dimerisation domain containing protein
LOC_Os11g38430OsAffx.31366.1.S1_at11/1111+22258418..22258844hypothetical protein
LOC_Os11g38440OsAffx.31368.2.S1_at11/1111+22262470..22266357expressed protein
LOC_Os11g38440OsAffx.31368.1.S1_x_at4/1111+22262470..22266357expressed protein
LOC_Os11g38440Os.55420.1.A1_x_at1/1111+22262470..22266357expressed protein
LOC_Os11g38450OsAffx.7341.1.S1_at11/1111+22267275..22270808hypothetical protein
LOC_Os11g38450OsAffx.31372.1.S1_at2/1111+22267275..22270808hypothetical protein
LOC_Os11g38456Os.47463.1.S1_x_at5/1111+22276068..22279789transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g38456Os.14491.2.S1_x_at4/1111+22276068..22279789transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g38462NANA11+22282777..22286109transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31366.1.S1_at--1078--5171Chr11:22258456..22258480 (25 bp)
GCAAGGCGGATCTGCCTTCACAAGG
LOC_Os11g38430
OsAffx.31366.1.S1_at--342--911Chr11:22258459..22258483 (25 bp)
AGGCGGATCTGCCTTCACAAGGTCA
LOC_Os11g38430
OsAffx.31366.1.S1_at--187--4691Chr11:22258461..22258485 (25 bp)
GCGGATCTGCCTTCACAAGGTCAGG
LOC_Os11g38430
OsAffx.31366.1.S1_at--490--7971Chr11:22258463..22258487 (25 bp)
GGATCTGCCTTCACAAGGTCAGGAG
LOC_Os11g38430
OsAffx.31366.1.S1_at--551--471Chr11:22258465..22258489 (25 bp)
ATCTGCCTTCACAAGGTCAGGAGAG
LOC_Os11g38430
OsAffx.31366.1.S1_at--27--6371Chr11:22258493..22258517 (25 bp)
GATCCACCATCGCTGAGCTTGGGAG
LOC_Os11g38430
OsAffx.31366.1.S1_at--9--9231Chr11:22258495..22258519 (25 bp)
TCCACCATCGCTGAGCTTGGGAGGG
LOC_Os11g38430
OsAffx.31366.1.S1_at--384--7571Chr11:22258518..22258542 (25 bp)
GGGCGCATCCACTGTCATCGGGCTC
LOC_Os11g38430
OsAffx.31366.1.S1_at--144--4991Chr11:22258522..22258546 (25 bp)
GCATCCACTGTCATCGGGCTCAGGA
LOC_Os11g38430
OsAffx.31366.1.S1_at--889--3531Chr11:22258523..22258547 (25 bp)
CATCCACTGTCATCGGGCTCAGGAG
LOC_Os11g38430
OsAffx.31366.1.S1_at--301--3871Chr11:22258529..22258776 (25 bp)
CTGTCATCGGGCTCAGGAGGAATGT
LOC_Os11g38430
Target Sequence 
GCAAGGCGGATCTGCCTTCACAAGGTCAGGAGAGGTGGATCCACCATCGCTGAGCTTGGGAGGGGCGCATCCACTGTCAT
CGGGCTCAGGAGGAATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31366.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis