Browse Element(s) Details


OsAffx.31368.2.S1_at

Description tigr:9639.m03489
TID=OsAffx.31368.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3844011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g38400OsAffx.31364.1.S1_at11/1111+22237414..22237797hypothetical protein
LOC_Os11g38410NANA11+22245684..22246118hypothetical protein
LOC_Os11g38420Os.20602.2.S1_x_at10/1111+22253727..22255907hAT family dimerisation domain containing protein
LOC_Os11g38430OsAffx.31366.1.S1_at11/1111+22258418..22258844hypothetical protein
LOC_Os11g38440OsAffx.31368.2.S1_at11/1111+22262470..22266357expressed protein
LOC_Os11g38440OsAffx.31368.1.S1_x_at4/1111+22262470..22266357expressed protein
LOC_Os11g38440Os.55420.1.A1_x_at1/1111+22262470..22266357expressed protein
LOC_Os11g38450OsAffx.7341.1.S1_at11/1111+22267275..22270808hypothetical protein
LOC_Os11g38450OsAffx.31372.1.S1_at2/1111+22267275..22270808hypothetical protein
LOC_Os11g38456Os.47463.1.S1_x_at5/1111+22276068..22279789transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g38456Os.14491.2.S1_x_at4/1111+22276068..22279789transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g38462NANA11+22282777..22286109transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31368.2.S1_at--1086--1111Chr11:22265782..22265806 (25 bp)
AGTGACCTACATGAGTGCCTGCTTT
LOC_Os11g38440
OsAffx.31368.2.S1_at--489--6111Chr11:22265794..22265818 (25 bp)
GAGTGCCTGCTTTCTCTGTCAATCA
LOC_Os11g38440
OsAffx.31368.2.S1_at--1031--6111Chr11:22265839..22265863 (25 bp)
GAGGGTTCTCCTTCAATCCTAGAGT
LOC_Os11g38440
OsAffx.31368.2.S1_at--180--10511Chr11:22265850..22265874 (25 bp)
TTCAATCCTAGAGTTACCAGATGAT
LOC_Os11g38440
OsAffx.31368.2.S1_at--1009--1711Chr11:22265865..22265889 (25 bp)
ACCAGATGATATTGGCTCTTGCCTA
LOC_Os11g38440
OsAffx.31368.2.S1_at--152--31Chr11:22265875..22265899 (25 bp)
ATTGGCTCTTGCCTAAGACACCATG
LOC_Os11g38440
OsAffx.31368.2.S1_at--75--5651Chr11:22265891..22265915 (25 bp)
GACACCATGCCAATATTCTTGAGAG
LOC_Os11g38440
OsAffx.31368.2.S1_at--949--3931Chr11:22265928..22265952 (25 bp)
CGGAGCCATGCATCTTTTTCCATTA
LOC_Os11g38440
OsAffx.31368.2.S1_at--1122--10371Chr11:22265943..22265967 (25 bp)
TTTTCCATTATTGACCAAAGGTGGC
LOC_Os11g38440
OsAffx.31368.2.S1_at--435--5831Chr11:22265955..22265979 (25 bp)
GACCAAAGGTGGCAATAACAAGCTT
LOC_Os11g38440
OsAffx.31368.2.S1_at--212--3731Chr11:22266158..22266182 (25 bp)
CTAATGTCACTTTTGAGGATGGATC
LOC_Os11g38440
Target Sequence 
AGTGACCTACATGAGTGCCTGCTTTCTCTGTCAATCACTATTCCCACAGCCACACCCGAGGGTTCTCCTTCAATCCTAGA
GTTACCAGATGATATTGGCTCTTGCCTAAGACACCATGCCAATATTCTTGAGAGTCTAAGCATCAGCGGAGCCATGCATC
TTTTTCCATTATTGACCAAAGGTGGCAATAACAAGCTTGCCAAGGTAACTCTATGTAGCACACCACTGAACCAAGATGAT
CTGGAGGTCCTCGCCAAGCTACCCAAGTTACAGTGTGTTAGGCTCCAACACATTTCATGCACAGGGAGCGTGCTCATCTT
CAAGGAAGATGATTTCAAATGTCTCAAGTACCTTCTTATTGAGGGTTTTAACTTGACTAATGTCACTTTTGAGGATGGAT
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31368.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis