Browse Element(s) Details


OsAffx.31399.1.S1_at

Description tigr:9639.m03652
TID=OsAffx.31399.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc knuckle, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3998011/11Zinc knuckle family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g39950OsAffx.22385.1.S1_x_at4/1111+23305139..23311000retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g39950OsAffx.20329.1.S1_at2/1111+23305139..23311000retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g39950Os.46862.1.S1_at1/1111+23305139..23311000retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g39960OsAffx.19264.1.S1_at11/1111+23318311..23318802hypothetical protein
LOC_Os11g39969NANA11+23327976..23328433NA
LOC_Os11g39980OsAffx.31399.1.S1_at11/1111+23335801..23337085Zinc knuckle family protein
LOC_Os11g39990Os.49524.1.S1_at9/1111+23343292..23347200Patatin-like phospholipase family protein, expressed
LOC_Os11g39990Os.8523.1.S1_at3/1111+23343292..23347200Patatin-like phospholipase family protein, expressed
LOC_Os11g39990Os.46576.1.S1_x_at1/1111+23343292..23347200Patatin-like phospholipase family protein, expressed
LOC_Os11g40009Os.8523.1.S1_at11/1111+23350722..23359556Patatin-like phospholipase family protein, expressed
LOC_Os11g40009Os.56286.1.S1_at11/1111+23350722..23359556Patatin-like phospholipase family protein, expressed
LOC_Os11g40009Os.49524.1.S1_at1/1111+23350722..23359556Patatin-like phospholipase family protein, expressed
LOC_Os11g40009OsAffx.7370.1.S1_at1/1111+23350722..23359556Patatin-like phospholipase family protein, expressed
LOC_Os11g40009Os.52047.1.S1_x_at1/1111+23350722..23359556Patatin-like phospholipase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31399.1.S1_at--541--5571Chr11:23336549..23336573 (25 bp)
GAAAGTAACTTCGATTCAAGAATCA
LOC_Os11g39980
OsAffx.31399.1.S1_at--419--7871Chr11:23336423..23336447 (25 bp)
GGTTTCTTCATTGGATCTTGGTGCT
LOC_Os11g39980
OsAffx.31399.1.S1_at--701--9071Chr11:23336402..23336426 (25 bp)
TGCTTCTTCATCGAACTCTGTCTCT
LOC_Os11g39980
OsAffx.31399.1.S1_at--334--2011Chr11:23336388..23336412 (25 bp)
ACTCTGTCTCTCTTTATTCCATTAA
LOC_Os11g39980
OsAffx.31399.1.S1_at--63--10231Chr11:23336374..23336398 (25 bp)
TATTCCATTAATGCCTTGTCCGATG
LOC_Os11g39980
OsAffx.31399.1.S1_at--1157--7631Chr11:23336232..23336256 (25 bp)
GGGAGCTTGATCACATTCGCTCACA
LOC_Os11g39980
OsAffx.31399.1.S1_at--818--6311Chr11:23336179..23336203 (25 bp)
GATGACAATGGAGTCAAGACCAAGG
LOC_Os11g39980
OsAffx.31399.1.S1_at--422--5611Chr11:23336155..23336179 (25 bp)
GACAACAAGCCCGTTACAACATTCA
LOC_Os11g39980
OsAffx.31399.1.S1_at--835--1031Chr11:23336100..23336124 (25 bp)
AGGTGCTAAATCAAGTCTATGCTGC
LOC_Os11g39980
OsAffx.31399.1.S1_at--337--3691Chr11:23336084..23336108 (25 bp)
CTATGCTGCTTTTGAACCGGCAAGC
LOC_Os11g39980
OsAffx.31399.1.S1_at--637--10751Chr11:23336073..23336097 (25 bp)
TTGAACCGGCAAGCAATGGTGATAT
LOC_Os11g39980
Target Sequence 
GAAAGTAACTTCGATTCAAGAATCAGTTGATATGTTTTGCTTGACTTTGGATTCTCTTTACACAAAACTCAAAACCCATG
AGATGAATATTCTTTCTCAAAAGGTTGATTCTAAGTCAAGTGCTTTGGTTTCTTCATTGGATCTTGGTGCTTCTTCATCG
AACTCTGTCTCTCTTTATTCCATTAATGCCTTGTCCGATGATCAACTCGAATCATTCGAGGAGGAGGATTTGGCTTTGGC
TATTAACAAGTTGTCTCGAGCTATGAACAATGTTAGGTTGAAGAAAAGAGGAGGTCGAATTCGATGTTTTGAATGTGGGG
AGCTTGATCACATTCGCTCACATTGTCCCAAGTTGGGGAGAGACAAGAAAGATGACAATGGAGTCAAGACCAAGGACAAC
AAGCCCGTTACAACATTCAAGGGAAGAAGATCCAAGGAGGCTCTCAAGAAGGTGCTAAATCAAGTCTATGCTGCTTTTGA
ACCGGCAAGCAATGGTGATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31399.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis