Browse Element(s) Details


OsAffx.31405.2.S1_at

Description tigr:9639.m03699
TID=OsAffx.31405.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4042011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g40380OsAffx.31404.1.S1_at11/1111+23570270..23574297Protein kinase domain containing protein, expressed
LOC_Os11g40390Os.52589.1.S1_at11/1111+23576391..23580832expressed protein
LOC_Os11g40400OsAffx.19274.1.S1_at11/1111+23583292..23585169expressed protein
LOC_Os11g40410OsAffx.31405.1.S1_at11/1111+23588078..23590550expressed protein
LOC_Os11g40420OsAffx.31405.2.S1_at11/1111+23594940..23597170expressed protein
LOC_Os11g40430OsAffx.31406.1.S1_at11/1111+23600608..23604943Protein kinase domain containing protein, expressed
LOC_Os11g40439NANA11+23614246..23615924NA
LOC_Os11g40450OsAffx.20275.1.S1_at1/1111+23618819..23631316retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31405.2.S1_at--466--1471Chr11:23595686..23595710 (25 bp)
AGAAGGCAGCAGTCATCCGAGCACT
LOC_Os11g40420
OsAffx.31405.2.S1_at--261--5951Chr11:23595668..23595692 (25 bp)
GAGCACTGCGCTCCATGGACCTTGA
LOC_Os11g40420
OsAffx.31405.2.S1_at--1149--2451Chr11:23595520..23595544 (25 bp)
AACAAGCCTCTGTGCGATCAATCTT
LOC_Os11g40420
OsAffx.31405.2.S1_at--296--3191Chr11:23595502..23595526 (25 bp)
CAATCTTGCCAATGATCGTAGGATC
LOC_Os11g40420
OsAffx.31405.2.S1_at--1070--10311Chr11:23595222..23595460 (25 bp)
TTTCTTGTCAGAGTATTGCGCTTTA
LOC_Os11g40420
OsAffx.31405.2.S1_at--371--4891Chr11:23595203..23595227 (25 bp)
GCTTTACTGGCGAATGCACTCATCA
LOC_Os11g40420
OsAffx.31405.2.S1_at--440--7551Chr11:23595171..23595195 (25 bp)
GGGCCAAGCATGTCTCTGGGAGATC
LOC_Os11g40420
OsAffx.31405.2.S1_at--1113--10711Chr11:23595112..23595136 (25 bp)
TTGCTCCCAGTTCCAATGTAGAAGC
LOC_Os11g40420
OsAffx.31405.2.S1_at--268--751Chr11:23595097..23595121 (25 bp)
ATGTAGAAGCTCACGCCAAGGATCT
LOC_Os11g40420
OsAffx.31405.2.S1_at--722--1971Chr11:23595062..23595086 (25 bp)
ACTGAGTTCATAACCCTCATTTGGG
LOC_Os11g40420
OsAffx.31405.2.S1_at--952--8171Chr11:23594971..23594995 (25 bp)
GGAACGACACTCCTGGACTGGTTAA
LOC_Os11g40420
Target Sequence 
AGAAGGCAGCAGTCATCCGAGCACTGCGCTCCATGGACCTTGAGGGCCATCCTCTGTCAAGAGACCTCCCATCGCCACGT
GTCAGTGACAGAGCAGAGAGTTATTGGTTGGCATGCCTTGAAGAGTTACCAAGATGCTCCCGTGTTATTCTGGTCTGGCA
CATCGCAACAAGCCTCTGTGCGATCAATCTTGCCAATGATCGTAGGATCAACTTAACCAGCAAGTTTCAGAAGGCACATG
ATGTGGCCAATTTCTTGTCAGAGTATTGCGCTTTACTGGCGAATGCACTCATCAAGAAGGAGGGCCAAGCATGTCTCTGG
GAGATCCTAGCTGAGGTGTGGGGTCACTTGATTGTGCACATTGCTCCCAGTTCCAATGTAGAAGCTCACGCCAAGGATCT
CAAGTCTGATACTGAGTTCATAACCCTCATTTGGGCTTTGTTTTGTCATTGTGGCATCGAGAAAAGCGAATTATGGCAGG
AGAAGAAGGGTGCAAAGTCTGGGAACGACACTCCTGGACTGGTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31405.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis