Browse Element(s) Details


Os.52589.1.S1_at

Description gb:AK068193.1
DB_XREF= gi:32978211
TID=Os.52589.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52589 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013091I08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013146L08, full insert sequence.
FL= gb:AK099744.1 gb:AK068193.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4039011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g40350OsAffx.31402.1.S1_at11/1111+23552451..23552765hypothetical protein
LOC_Os11g40360OsAffx.424.1.S1_at8/1111+23558607..23564201hAT family dimerisation domain containing protein
LOC_Os11g40360OsAffx.7176.1.S1_at1/1111+23558607..23564201hAT family dimerisation domain containing protein
LOC_Os11g40370OsAffx.31403.1.S1_at11/1111+23565758..23567587Protein kinase domain containing protein, expressed
LOC_Os11g40380OsAffx.31404.1.S1_at11/1111+23570270..23574297Protein kinase domain containing protein, expressed
LOC_Os11g40390Os.52589.1.S1_at11/1111+23576391..23580832expressed protein
LOC_Os11g40400OsAffx.19274.1.S1_at11/1111+23583292..23585169expressed protein
LOC_Os11g40410OsAffx.31405.1.S1_at11/1111+23588078..23590550expressed protein
LOC_Os11g40420OsAffx.31405.2.S1_at11/1111+23594940..23597170expressed protein
LOC_Os11g40430OsAffx.31406.1.S1_at11/1111+23600608..23604943Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52589.1.S1_at--1160--1011Chr11:23576954..23576978 (25 bp)
AGGTACGCATGGTCTAAATCTGAGT
LOC_Os11g40390
Os.52589.1.S1_at--45--1051Chr11:23576912..23576936 (25 bp)
AGGTGCTATACTGGCTAATGAACTC
LOC_Os11g40390
Os.52589.1.S1_at--479--791Chr11:23576844..23576868 (25 bp)
ATGTGTGGGTTCACTTGCTTGTGCA
LOC_Os11g40390
Os.52589.1.S1_at--784--6151Chr11:23576785..23576809 (25 bp)
GAGGACCTCAAATCCGGTGTCGAGT
LOC_Os11g40390
Os.52589.1.S1_at--698--8711Chr11:23576768..23576792 (25 bp)
TGTCGAGTTCGTAACCGTCATCTGG
LOC_Os11g40390
Os.52589.1.S1_at--446--5111Chr11:23576670..23576694 (25 bp)
GCACTCCTGGACCATCTAATCAGAG
LOC_Os11g40390
Os.52589.1.S1_at--476--1531Chr11:23576647..23576671 (25 bp)
AGCAGTGATGTGTCTACCCATGTTC
LOC_Os11g40390
Os.52589.1.S1_at--622--8791Chr11:23576627..23576651 (25 bp)
TGTTCAGGACACAGTCAGCTCTAGT
LOC_Os11g40390
Os.52589.1.S1_at--230--1771Chr11:23576600..23576624 (25 bp)
ACCTGCTGCTCGATCTTCAGAAATT
LOC_Os11g40390
Os.52589.1.S1_at--53--7271Chr11:23576562..23576586 (25 bp)
GTCCTACTTCTGGTATGTCCTGAAA
LOC_Os11g40390
Os.52589.1.S1_at--56--4191Chr11:23576507..23576531 (25 bp)
CCCTCATGGTTTCAGTTTTGTCGGT
LOC_Os11g40390
Target Sequence 
AGGTACGCATGGTCTAAATCTGAGTGGAAACATATTGCAACAAGGTGCTATACTGGCTAATGAACTCATCAAGAAGGAGG
ACCAAAAATGTCGTTGGGAGATCCTATCTGATGTGTGGGTTCACTTGCTTGTGCACATTGCTCCCAGTTCTGACGCAGCA
GCTCTTGCCGAGGACCTCAAATCCGGTGTCGAGTTCGTAACCGTCATCTGGGCTTTGTTTTGCCACTGTGGCATCGAGAA
GAGCAAATTATGGCAACAGCAGAAGAGTGCAAATTTCAGGAACAGCACTCCTGGACCATCTAATCAGAGCAGTGATGTGT
CTACCCATGTTCAGGACACAGTCAGCTCTAGTCCACCTGCTGCTCGATCTTCAGAAATTCATGTAGAGGCTAGTCCTACT
TCTGGTATGTCCTGAAACCTGAATTGCTGATGGCTGATGCTCTGCTCCCCTCATGGTTTCAGTTTTGTCGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52589.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis