Browse Element(s) Details


OsAffx.7176.1.S1_at

Description tigr:9639.m02086
TID=OsAffx.7176.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2378010/11hypothetical protein
LOC_Os11g403601/11hAT family dimerisation domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g23750Os.41248.4.S1_x_at2/1111+12925217..12931646retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g23750Os.40288.1.S1_x_at1/1111+12925217..12931646retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g23760Os.46314.3.S1_at2/1111+12935638..12942174transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g23760OsAffx.23366.1.S1_at1/1111+12935638..12942174transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g23760OsAffx.23366.2.S1_s_at1/1111+12935638..12942174transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g23760OsAffx.24844.1.S1_at1/1111+12935638..12942174transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g23770Os.17577.3.S1_at10/1111+12942584..12944695Ananain precursor, putative, expressed
LOC_Os11g23770Os.17577.1.S1_x_at9/1111+12942584..12944695Ananain precursor, putative, expressed
LOC_Os11g23780OsAffx.7176.1.S1_at10/1111+12950614..12952231hypothetical protein
LOC_Os11g23790Os.8213.1.S1_at11/1111+12960269..12966519expressed protein
LOC_Os11g23800OsAffx.31892.1.S1_x_at1/1111+12969286..12970068retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g23800OsAffx.31892.5.S1_x_at1/1111+12969286..12970068retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g23810OsAffx.22947.2.S1_x_at3/1111+12974240..12979722transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g23810Os.47463.1.S1_x_at3/1111+12974240..12979722transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g23810OsAffx.22947.1.S1_x_at3/1111+12974240..12979722transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g23810Os.14491.2.S1_x_at2/1111+12974240..12979722transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g23810OsAffx.22947.3.S1_x_at1/1111+12974240..12979722transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7176.1.S1_at--1114--2571Chr11:12952146..12952170 (25 bp)
AACGGTGTATCCTTGAGGGCGGACT
LOC_Os11g23780
OsAffx.7176.1.S1_at--430--10811Chr11:12952110..12952134 (25 bp)
TTGTAGATGTACTCAGCCCACGAAA
LOC_Os11g23780
OsAffx.7176.1.S1_at--936--8831NONE
TGATCACCGGTGAGGCATCGGAGCT
NONE
OsAffx.7176.1.S1_at--1012--491Chr11:12951181..12951362 (25 bp)
ATCGGAGCTGCTGCCAGCGGATGAC
LOC_Os11g23780
OsAffx.7176.1.S1_at--332--6311Chr11:12951156..12951180 (25 bp)
GATGAAACCGGAGCAGCTTCGAAGA
LOC_Os11g23780
OsAffx.7176.1.S1_at--591--5871Chr11:12951107..12951131 (25 bp)
GAGCCCAGGACAATGGCGATGCATT
LOC_Os11g23780
OsAffx.7176.1.S1_at--1124--631Chr11:12951089..12951113 (25 bp)
ATGCATTCGGCATGAGCTCGGCTCA
LOC_Os11g23780
OsAffx.7176.1.S1_at--700--8312Chr11:23558760..23558781 (22 bp)
GGCTCACACTTTCGGCGTGGACGCT
LOC_Os11g40360
OsAffx.7176.1.S1_at--796--9151Chr11:12950961..12950985 (25 bp)
TGCGCCTGCAGCCTGGACAGCGTTA
LOC_Os11g23780
OsAffx.7176.1.S1_at--553--10231Chr11:12950684..12950708 (25 bp)
TTTGGCAGGCTGTGGGCCCACATGT
LOC_Os11g23780
OsAffx.7176.1.S1_at--959--8391Chr11:12950645..12950669 (25 bp)
GGCGCTACATCTTCGGCCTTGGAAC
LOC_Os11g23780
Target Sequence 
AACGGTGTATCCTTGAGGGCGGACTGGAAGGCCATGTTGTAGATGTACTCAGCCCACGAAAGCCATCGCAGCCACTGGCG
GGGATGATCACCGGTGAGGCATCGGAGCTGCTGCCAGCGGATGACGATGAAACCGGAGCAGCTTCGAAGAGAAGAAAGGA
GACGGGGTGTCATAGAGCCCAGGACAATGGCGATGCATTCGGCATGAGCTCGGCTCACACTTTCGGCGTGGACGCTCGAG
GAGGTGAGGTGGTTGATTGGGTTCAGCGGCGCAAGCGCGGCACAGATGTTGGGGAAAAAGGCAGGCGAGGCGAGGTGTCA
TGCGCCTGCAGCCTGGACAGCGTTAGCGTGGGGCCGTGTAAGGTGGCACATGGAGGAGGCCAGGTGGCGGGCAAGCGCGC
CAACAAGGGGAAGGTTTGGCAGGCTGTGGGCCCACATGTGGCGCGGCTGGGCCGGCGCTACATCTTCGGCCTTGGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7176.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis